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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11201 1f1g:C (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    11202 1f1g:D (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    11203 1f1g:D (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    11204 1f1g:E (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    11205 1f1g:E (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    11206 1f1g:F (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    11207 1f1g:F (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    11208 1f1h:A (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11209 1f1h:A (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11210 1f1h:A (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11211 1f1h:B (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11212 1f1h:B (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11213 1f1h:B (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11214 1f1h:C (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11215 1f1h:C (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11216 1f1h:C (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11217 1f1h:D (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11218 1f1h:D (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11219 1f1h:D (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11220 1f1h:E (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11221 1f1h:E (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11222 1f1h:E (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11223 1f1h:F (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11224 1f1h:F (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11225 1f1h:F (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11226 1f1h:G (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11227 1f1h:G (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11228 1f1h:G (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11229 1f1h:H (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11230 1f1h:H (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11231 1f1h:H (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11232 1f1h:I (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11233 1f1h:I (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11234 1f1h:I (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11235 1f1h:J (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11236 1f1h:J (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11237 1f1h:J (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11238 1f1h:K (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11239 1f1h:K (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11240 1f1h:K (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11241 1f1h:L (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11242 1f1h:L (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11243 1f1h:L (2.67) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    11244 1f1j:A (2.35) BS01 peptide 3.4.22.60 GO:0003723 ... P55210 10873833
    11245 1f1j:B (2.35) BS01 peptide 3.4.22.60 GO:0003723 ... P55210 10873833
    11246 1f1r:A (1.8) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    11247 1f1r:B (1.8) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    11248 1f1u:A (1.5) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    11249 1f1u:B (1.5) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    11250 1f1v:A (1.9) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    11251 1f1v:A (1.9) BS02 DHY 1.13.11.15 GO:0003824 ... Q44048 15028678
    11252 1f1v:B (1.9) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    11253 1f1v:B (1.9) BS02 DHY 1.13.11.15 GO:0003824 ... Q44048 15028678
    11254 1f1w:A (2.1) BS01 peptide 2.7.10.2 N/A P00523 10911998
    11255 1f1x:A (1.6) BS01 FEL 1.13.11.15 N/A Q45135 15028678
    11256 1f1x:B (1.6) BS01 FEL 1.13.11.15 N/A Q45135 15028678
    11257 1f1x:C (1.6) BS01 FEL 1.13.11.15 N/A Q45135 15028678
    11258 1f1x:D (1.6) BS01 FEL 1.13.11.15 N/A Q45135 15028678
    11259 1f1z:A (2.4) BS01 MG 3.1.21.- GO:0003676 ... P13988 10911996
    11260 1f1z:B (2.4) BS01 MG 3.1.21.- GO:0003676 ... P13988 10911996
    11261 1f20:A (1.9) BS01 FAD 1.14.13.39 GO:0016491 ... P29476 11473123
    11262 1f20:A (1.9) BS02 NAP 1.14.13.39 GO:0016491 ... P29476 11473123
    11263 1f22:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 10561607
    11264 1f22:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 10561607
    11265 1f22:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 10561607
    11266 1f24:A (1.4) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11132616
    11267 1f24:A (1.4) BS02 NO 1.7.1.14 GO:0004497 ... P23295 11132616
    11268 1f25:A (1.4) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11132616
    11269 1f26:A (1.4) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11132616
    11270 1f26:A (1.4) BS02 NO 1.7.1.14 GO:0004497 ... P23295 11132616
    11271 1f28:A (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11272 1f28:A (1.9) BS02 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    11273 1f28:A (1.9) BS03 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11274 1f28:B (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11275 1f28:B (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11276 1f28:B (1.9) BS03 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    11277 1f28:C (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11278 1f28:C (1.9) BS02 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    11279 1f28:C (1.9) BS03 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11280 1f28:D (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11281 1f28:D (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11282 1f28:D (1.9) BS03 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    11283 1f29:A (2.15) BS01 VS1 3.4.22.51 GO:0006508 ... P25779 10997902
    11284 1f29:B (2.15) BS01 VS1 3.4.22.51 GO:0006508 ... P25779 10997902
    11285 1f29:C (2.15) BS01 VS1 3.4.22.51 GO:0006508 ... P25779 10997902
    11286 1f2a:A (1.6) BS01 VS2 3.4.22.51 GO:0006508 ... P25779 10997902
    11287 1f2b:A (1.8) BS01 VS3 3.4.22.51 GO:0006508 ... P25779 10997902
    11288 1f2c:A (2.0) BS01 VS4 3.4.22.51 GO:0006508 ... P25779 10997902
    11289 1f2d:A (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 10938279
    11290 1f2d:B (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 10938279
    11291 1f2d:C (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 10938279
    11292 1f2d:D (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 10938279
    11293 1f2e:A (2.3) BS01 GSH 2.5.1.18 GO:0004364 ... O33705 N/A
    11294 1f2e:B (2.3) BS01 GSH 2.5.1.18 GO:0004364 ... O33705 N/A
    11295 1f2e:C (2.3) BS01 GSH 2.5.1.18 GO:0004364 ... O33705 N/A
    11296 1f2e:D (2.3) BS01 GSH 2.5.1.18 GO:0004364 ... O33705 N/A
    11297 1f2g:A (-1.00) BS01 F3S ? GO:0005506 ... P00209 10555576
    11298 1f2i:G (2.35) BS01 dna ? N/A P08046 11427887
    11299 1f2i:G (2.35) BS02 dna ? N/A P08046 11427887
    11300 1f2i:G (2.35) BS03 ZN ? N/A P08046 11427887
    11301 1f2i:G (2.35) BS04 ZN ? N/A P08046 11427887
    11302 1f2i:H (2.35) BS01 dna ? N/A P08046 11427887
    11303 1f2i:H (2.35) BS02 ZN ? N/A P08046 11427887
    11304 1f2i:H (2.35) BS03 ZN ? N/A P08046 11427887
    11305 1f2i:I (2.35) BS01 dna ? N/A P08046 11427887
    11306 1f2i:I (2.35) BS02 ZN ? N/A P08046 11427887
    11307 1f2i:I (2.35) BS03 ZN ? N/A P08046 11427887
    11308 1f2i:J (2.35) BS01 dna ? N/A P08046 11427887
    11309 1f2i:J (2.35) BS02 dna ? N/A P08046 11427887
    11310 1f2i:J (2.35) BS03 ZN ? N/A P08046 11427887
    11311 1f2i:J (2.35) BS04 ZN ? N/A P08046 11427887
    11312 1f2i:K (2.35) BS01 dna ? N/A P08046 11427887
    11313 1f2i:K (2.35) BS02 ZN ? N/A P08046 11427887
    11314 1f2i:K (2.35) BS03 ZN ? N/A P08046 11427887
    11315 1f2i:L (2.35) BS01 dna ? N/A P08046 11427887
    11316 1f2i:L (2.35) BS02 ZN ? N/A P08046 11427887
    11317 1f2i:L (2.35) BS03 ZN ? N/A P08046 11427887
    11318 1f2n:A (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    11319 1f2n:A (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    11320 1f2n:B (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    11321 1f2n:B (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    11322 1f2n:C (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    11323 1f2n:C (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    11324 1f2o:A (1.7) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    11325 1f2o:A (1.7) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    11326 1f2o:A (1.7) BS03 CA 3.4.11.24 GO:0004177 ... P80561 11484227
    11327 1f2o:A (1.7) BS04 LEU 3.4.11.24 GO:0004177 ... P80561 11484227 MOAD: Ki=12.4mM
    PDBbind: -logKd/Ki=1.91, Ki=12.4mM
    11328 1f2p:A (1.8) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    11329 1f2p:A (1.8) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 11484227
    11330 1f2p:A (1.8) BS03 CA 3.4.11.24 GO:0004177 ... P80561 11484227
    11331 1f2p:A (1.8) BS04 PHE 3.4.11.24 GO:0004177 ... P80561 11484227 MOAD: Ki=12.7mM
    PDBbind: -logKd/Ki=1.90, Ki=12.7mM
    11332 1f2s:E (1.79) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 10524768
    11333 1f2s:E (1.79) BS02 CA 3.4.21.4 GO:0004175 ... P00760 10524768
    11334 1f2u:A (1.6) BS01 MG ? GO:0006302 ... P58301 10892749
    11335 1f2u:A (1.6) BS02 ATP ? GO:0006302 ... P58301 10892749
    11336 1f2u:B (1.6) BS01 ATP ? GO:0005524 ... P58301 10892749
    11337 1f2u:C (1.6) BS01 MG ? GO:0006302 ... P58301 10892749
    11338 1f2u:C (1.6) BS02 ATP ? GO:0006302 ... P58301 10892749
    11339 1f2u:D (1.6) BS01 ATP ? GO:0005524 ... P58301 10892749
    11340 1f2w:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11015219
    11341 1f2w:A (1.9) BS02 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11015219
    11342 1f2w:A (1.9) BS03 CNN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11015219
    11343 1f30:A (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11344 1f30:B (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11345 1f30:E (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11346 1f30:F (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11347 1f30:G (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11348 1f30:H (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11349 1f30:I (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11350 1f30:J (2.85) BS01 ZN 1.16.-.- GO:0003677 ... P0ABT2 N/A
    11351 1f31:A (2.6) BS01 GLA 3.4.24.69 GO:0004222 ... P10844 10932256
    11352 1f31:A (2.6) BS02 SIA 3.4.24.69 GO:0004222 ... P10844 10932256
    11353 1f31:A (2.6) BS03 ZN 3.4.24.69 GO:0004222 ... P10844 10932256
    11354 1f35:A (2.3) BS01 ZN ? GO:0005634 ... Q64288 12054872
    11355 1f35:A (2.3) BS02 ZN ? GO:0005634 ... Q64288 12054872
    11356 1f35:B (2.3) BS01 ZN ? GO:0005634 ... Q64288 12054872
    11357 1f35:B (2.3) BS02 ZN ? GO:0005634 ... Q64288 12054872
    11358 1f37:A (2.3) BS01 FES ? GO:0046872 ... O66511 10884354
    11359 1f37:B (2.3) BS01 FES ? GO:0046872 ... O66511 10884354
    11360 1f3a:A (1.9) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11361 1f3a:A (1.9) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11362 1f3a:B (1.9) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11363 1f3a:B (1.9) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11364 1f3b:A (2.0) BS01 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11365 1f3b:A (2.0) BS02 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11366 1f3b:B (2.0) BS01 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11367 1f3b:B (2.0) BS02 GBX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P13745 11027134
    11368 1f3d:H (1.87) BS01 TPM N/A N/A N/A 10963661
    11369 1f3d:J (1.87) BS01 TPM ? GO:0046872 ... A2NHM3 10963661
    11370 1f3d:K (1.87) BS01 TPM N/A N/A N/A 10963661
    11371 1f3d:L (1.87) BS01 TPM ? GO:0046872 ... A2NHM3 10963661
    11372 1f3e:A (1.85) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 11178905
    11373 1f3e:A (1.85) BS02 DPZ 2.4.2.29 GO:0002099 ... P28720 11178905 MOAD: Ki=0.2uM
    PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    11374 1f3f:A (1.85) BS01 D4T 2.7.4.6 GO:0004550 ... P22887 10899107 MOAD: Kd=21.3uM
    11375 1f3f:B (1.85) BS01 PO4 2.7.4.6 GO:0004550 ... P22887 10899107
    11376 1f3f:B (1.85) BS02 D4T 2.7.4.6 GO:0004550 ... P22887 10899107 MOAD: Kd=21.3uM
    11377 1f3f:B (1.85) BS03 D4D 2.7.4.6 GO:0004550 ... P22887 10899107
    11378 1f3f:C (1.85) BS01 D4T 2.7.4.6 GO:0004550 ... P22887 10899107 MOAD: Kd=21.3uM
    11379 1f3h:A (2.58) BS01 ZN ? GO:0000228 ... O15392 10876248
    11380 1f3h:A (2.58) BS02 SO4 ? GO:0000228 ... O15392 10876248
    11381 1f3h:A (2.58) BS03 SO4 ? GO:0000228 ... O15392 10876248
    11382 1f3h:B (2.58) BS01 ZN ? GO:0000228 ... O15392 10876248
    11383 1f3j:A (3.1) BS01 peptide ? GO:0006955 ... P04228 10894169
    11384 1f3j:B (3.1) BS01 peptide ? GO:0006955 ... Q31135 10894169
    11385 1f3j:D (3.1) BS01 peptide ? GO:0006955 ... P04228 10894169
    11386 1f3j:E (3.1) BS01 peptide ? GO:0006955 ... Q31135 10894169
    11387 1f3l:A (2.03) BS01 SAH 2.1.1.319 GO:0016274 ... O70467 10899106
    11388 1f3o:A (2.7) BS01 ADP ? GO:0005524 ... Q58206 11402022
    11389 1f3p:A (2.4) BS01 FAD 1.14.-.- GO:0000166 ... Q52437 11090282
    11390 1f3p:A (2.4) BS02 NAD 1.14.-.- GO:0000166 ... Q52437 11090282
    11391 1f3r:B (-1.00) BS01 peptide N/A N/A N/A 10679615
    11392 1f3t:A (2.0) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10985770
    11393 1f3t:A (2.0) BS02 PUT 4.1.1.17 GO:0003824 ... P07805 10985770
    11394 1f3t:B (2.0) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10985770
    11395 1f3t:B (2.0) BS02 PUT 4.1.1.17 GO:0003824 ... P07805 10985770
    11396 1f3t:C (2.0) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10985770
    11397 1f3t:C (2.0) BS02 PUT 4.1.1.17 GO:0003824 ... P07805 10985770
    11398 1f3t:D (2.0) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10985770
    11399 1f3w:A (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914
    11400 1f3w:A (3.0) BS02 PYR 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 11563914

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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