Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4505 4506 4507 4508 4509 4510 4511 4512 4513 4514 4515 4516 4517 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902801 9ft1:W (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    902802 9ft1:Y (2.6) BS01 MG N/A N/A P30656 N/A
    902803 9ft1:Y (2.6) BS02 A1IFK N/A N/A P30656 N/A
    902804 9ft1:Z (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    902805 9ftg:A (3.1) BS01 CA N/A N/A V4JF97 N/A
    902806 9ftg:B (3.1) BS01 CA N/A N/A V4JF97 N/A
    902807 9ftg:C (3.1) BS01 CA N/A N/A V4JF97 N/A
    902808 9ftg:D (3.1) BS01 CA N/A N/A V4JF97 N/A
    902809 9ftg:E (3.1) BS01 CA N/A N/A V4JF97 N/A
    902810 9ftw:A (1.65) BS01 CA N/A N/A P21128 39070628
    902811 9ftw:A (1.65) BS02 CA N/A N/A P21128 39070628
    902812 9ftw:A (1.65) BS03 CA N/A N/A P21128 39070628
    902813 9ftw:A (1.65) BS04 CA N/A N/A P21128 39070628
    902814 9ftw:A (1.65) BS05 CA N/A N/A P21128 39070628
    902815 9ftw:B (1.65) BS01 CA N/A N/A P21128 39070628
    902816 9ftw:B (1.65) BS02 CA N/A N/A P21128 39070628
    902817 9ftw:B (1.65) BS03 CA N/A N/A P21128 39070628
    902818 9ftw:B (1.65) BS04 CA N/A N/A P21128 39070628
    902819 9ftw:B (1.65) BS05 CA N/A N/A P21128 39070628
    902820 9fvo:A (1.8) BS01 478 N/A N/A P11838 N/A
    902821 9fvt:A (1.49) BS01 MG N/A N/A N/A N/A
    902822 9fvt:B (1.49) BS01 MG N/A N/A N/A N/A
    902823 9fvt:C (1.49) BS01 MG N/A N/A N/A N/A
    902824 9fvt:D (1.49) BS01 MG N/A N/A N/A N/A
    902825 9fw2:A (1.77) BS01 ZN N/A N/A P0DTD1 N/A
    902826 9fw2:A (1.77) BS02 ZN N/A N/A P0DTD1 N/A
    902827 9fw2:B (1.77) BS01 ZN N/A N/A P0DTD1 N/A
    902828 9fw2:B (1.77) BS02 ZN N/A N/A P0DTD1 N/A
    902829 9fwg:A (3.2) BS01 A1IG2 N/A GO:0000122 ... O60341 38619005
    902830 9fwx:A (1.25) BS01 A1IGX N/A N/A O60885 39069741
    902831 9fx6:B (2.227) BS01 MG N/A N/A P0DTC1 39052318
    902832 9fx7:A (2.282) BS01 MG N/A N/A P0DTD1 39052318
    902833 9fx7:B (2.282) BS01 MG N/A N/A P0DTD1 39052318
    902834 9fxh:A (2.3) BS01 CO N/A N/A Q16769 39125848
    902835 9fxh:B (2.3) BS01 CO N/A N/A Q16769 39125848
    902836 9fxh:C (2.3) BS01 CO N/A N/A Q16769 39125848
    902837 9fxi:A (3.06) BS01 CO N/A N/A Q16769 39125848
    902838 9fxi:A (3.06) BS02 S77 N/A N/A Q16769 39125848
    902839 9fxi:B (3.06) BS01 S77 N/A N/A Q16769 39125848
    902840 9fxi:B (3.06) BS02 CO N/A N/A Q16769 39125848
    902841 9fxi:C (3.06) BS01 CO N/A N/A Q16769 39125848
    902842 9fxi:C (3.06) BS02 S77 N/A N/A Q16769 39125848
    902843 9fxj:A (3.06) BS01 CO N/A N/A Q16769 39125848
    902844 9fxj:A (3.06) BS02 PBD N/A N/A Q16769 39125848
    902845 9fxj:B (3.06) BS01 CO N/A N/A Q16769 39125848
    902846 9fxj:B (3.06) BS02 PBD N/A N/A Q16769 39125848
    902847 9fxj:C (3.06) BS01 CO N/A N/A Q16769 39125848
    902848 9fxj:C (3.06) BS02 PBD N/A N/A Q16769 39125848
    902849 9fxp:A (1.88) BS01 5WX N/A N/A O60885 39069741
    902850 9fyb:A (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    902851 9fyb:B (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    902852 9fyf:A (2.7) BS01 A1IG6 N/A N/A P68400 N/A
    902853 9fyf:B (2.7) BS01 A1IG6 N/A N/A P68400 N/A
    902854 9fz4:A (2.44) BS01 ZN N/A N/A P0DTD1 N/A
    902855 9fz4:A (2.44) BS02 ZN N/A N/A P0DTD1 N/A
    902856 9fz4:B (2.44) BS01 ZN N/A N/A P0DTD1 N/A
    902857 9fz4:B (2.44) BS02 ZN N/A N/A P0DTD1 N/A
    902858 9fz4:B (2.44) BS03 MG N/A N/A P0DTD1 N/A
    902859 9fzc:A (2.27) BS01 CA N/A N/A P0A910 N/A
    902860 9fzc:B (2.27) BS01 CA N/A N/A P0A910 N/A
    902861 9fzk:A (1.3) BS01 ZN N/A N/A P0DTD1 N/A
    902862 9fzk:A (1.3) BS02 ZN N/A N/A P0DTD1 N/A
    902863 9fzk:B (1.3) BS01 ZN N/A N/A P0DTD1 N/A
    902864 9fzk:B (1.3) BS02 ZN N/A N/A P0DTD1 N/A
    902865 9g0k:A (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    902866 9g0k:B (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    902867 9g11:A (3.2) BS01 BGC N/A N/A Q9SFG0 N/A
    902868 9g11:A (3.2) BS02 Y01 N/A N/A Q9SFG0 N/A
    902869 9g11:A (3.2) BS03 Y01 N/A N/A Q9SFG0 N/A
    902870 9g11:A (3.2) BS04 Y01 N/A N/A Q9SFG0 N/A
    902871 9g13:A (1.8) BS01 peptide N/A N/A N/A N/A
    902872 9g13:A (1.8) BS02 peptide N/A N/A N/A N/A
    902873 9g13:C (1.8) BS01 peptide N/A N/A N/A N/A
    902874 9g13:C (1.8) BS02 peptide N/A N/A N/A N/A
    902875 9g13:E (1.8) BS01 peptide N/A N/A N/A N/A
    902876 9g13:E (1.8) BS02 peptide N/A N/A N/A N/A
    902877 9g13:G (1.8) BS01 peptide N/A N/A N/A N/A
    902878 9g13:G (1.8) BS02 peptide N/A N/A N/A N/A
    902879 9g34:A (1.3) BS01 017 N/A N/A P11838 N/A
    902880 9g34:B (1.3) BS01 017 N/A N/A P11838 N/A
    902881 9g35:A (1.5) BS01 AB1 N/A N/A P11838 N/A
    902882 9g7h:A (1.75) BS01 AR6 N/A N/A Q8N6T7 38940296
    902883 9g7h:A (1.75) BS02 ZN N/A N/A Q8N6T7 38940296
    902884 9g7h:A (1.75) BS03 A1IIZ N/A N/A Q8N6T7 38940296
    902885 9g7h:B (1.75) BS01 AR6 N/A N/A Q8N6T7 38940296
    902886 9g7h:B (1.75) BS02 ZN N/A N/A Q8N6T7 38940296
    902887 9gac:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    902888 9gac:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    902889 9gaf:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    902890 9gaf:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    902891 9gag:A (-1.00) BS01 peptide N/A N/A P50542 N/A
    902892 9gaw:C (2.9) BS01 ZN N/A N/A Q9NYG5 N/A
    902893 9gaw:C (2.9) BS02 ZN N/A N/A Q9NYG5 N/A
    902894 9gaw:C (2.9) BS03 ZN N/A N/A Q9NYG5 N/A
    902895 9gaw:K (2.9) BS01 peptide N/A N/A Q13042 N/A
    902896 9gaw:N (2.9) BS01 ZN N/A N/A Q9UJX6 N/A
    902897 9gaw:Q (2.9) BS01 peptide N/A N/A Q13042 N/A
    902898 9gaw:S (2.9) BS01 ZN N/A N/A Q9UKT4 N/A
    902899 9gaw:S (2.9) BS02 ZN N/A N/A Q9UKT4 N/A
    902900 9gbe:A (1.58) BS01 A1IJ8 N/A N/A Q9UM73 N/A
    902901 9gbv:A (2.32) BS01 dna N/A N/A P0AES4 N/A
    902902 9gbv:A (2.32) BS02 dna N/A N/A P0AES4 N/A
    902903 9gbv:B (2.32) BS01 dna N/A N/A P0AES6 N/A
    902904 9gbv:B (2.32) BS02 dna N/A N/A P0AES6 N/A
    902905 9gbv:C (2.32) BS01 dna N/A N/A P0AES4 N/A
    902906 9gbv:C (2.32) BS02 dna N/A N/A P0AES4 N/A
    902907 9gbv:D (2.32) BS01 dna N/A N/A P0AES6 N/A
    902908 9gbv:D (2.32) BS02 dna N/A N/A P0AES6 N/A
    902909 9gd0:A (2.8) BS01 dna N/A N/A P84233 39270644
    902910 9gd0:A (2.8) BS02 dna N/A N/A P84233 39270644
    902911 9gd0:B (2.8) BS01 dna N/A N/A P62799 39270644
    902912 9gd0:B (2.8) BS02 dna N/A N/A P62799 39270644
    902913 9gd0:C (2.8) BS01 dna N/A N/A P06897 39270644
    902914 9gd0:C (2.8) BS02 dna N/A N/A P06897 39270644
    902915 9gd0:D (2.8) BS01 dna N/A N/A P02281 39270644
    902916 9gd0:E (2.8) BS01 dna N/A N/A P84233 39270644
    902917 9gd0:E (2.8) BS02 dna N/A N/A P84233 39270644
    902918 9gd0:F (2.8) BS01 dna N/A N/A P62799 39270644
    902919 9gd0:F (2.8) BS02 dna N/A N/A P62799 39270644
    902920 9gd0:G (2.8) BS01 dna N/A N/A P06897 39270644
    902921 9gd0:G (2.8) BS02 dna N/A N/A P06897 39270644
    902922 9gd0:H (2.8) BS01 dna N/A N/A P02281 39270644
    902923 9gd0:H (2.8) BS02 dna N/A N/A P02281 39270644
    902924 9gd0:K (2.8) BS01 dna N/A N/A P84233 39270644
    902925 9gd0:K (2.8) BS02 dna N/A N/A P84233 39270644
    902926 9gd0:L (2.8) BS01 dna N/A N/A P62799 39270644
    902927 9gd0:L (2.8) BS02 dna N/A N/A P62799 39270644
    902928 9gd0:M (2.8) BS01 dna N/A N/A P06897 39270644
    902929 9gd0:M (2.8) BS02 dna N/A N/A P06897 39270644
    902930 9gd0:N (2.8) BS01 dna N/A N/A P02281 39270644
    902931 9gd0:O (2.8) BS01 dna N/A N/A P84233 39270644
    902932 9gd0:O (2.8) BS02 dna N/A N/A P84233 39270644
    902933 9gd0:P (2.8) BS01 dna N/A N/A P62799 39270644
    902934 9gd0:P (2.8) BS02 dna N/A N/A P62799 39270644
    902935 9gd1:A (4.0) BS01 dna N/A N/A P84233 39270644
    902936 9gd1:A (4.0) BS02 dna N/A N/A P84233 39270644
    902937 9gd1:B (4.0) BS01 dna N/A N/A P62799 39270644
    902938 9gd1:B (4.0) BS02 dna N/A N/A P62799 39270644
    902939 9gd1:C (4.0) BS01 dna N/A N/A P06897 39270644
    902940 9gd1:C (4.0) BS02 dna N/A N/A P06897 39270644
    902941 9gd1:D (4.0) BS01 dna N/A N/A P02281 39270644
    902942 9gd1:D (4.0) BS02 dna N/A N/A P02281 39270644
    902943 9gd1:E (4.0) BS01 dna N/A N/A P84233 39270644
    902944 9gd1:E (4.0) BS02 dna N/A N/A P84233 39270644
    902945 9gd1:F (4.0) BS01 dna N/A N/A P62799 39270644
    902946 9gd1:F (4.0) BS02 dna N/A N/A P62799 39270644
    902947 9gd1:G (4.0) BS01 dna N/A N/A P06897 39270644
    902948 9gd1:G (4.0) BS02 dna N/A N/A P06897 39270644
    902949 9gd1:H (4.0) BS01 dna N/A N/A P02281 39270644
    902950 9gd1:K (4.0) BS01 dna N/A N/A P84233 39270644
    902951 9gd1:K (4.0) BS02 dna N/A N/A P84233 39270644
    902952 9gd1:L (4.0) BS01 dna N/A N/A P62799 39270644
    902953 9gd1:L (4.0) BS02 dna N/A N/A P62799 39270644
    902954 9gd1:M (4.0) BS01 dna N/A N/A P06897 39270644
    902955 9gd1:M (4.0) BS02 dna N/A N/A P06897 39270644
    902956 9gd1:N (4.0) BS01 dna N/A N/A P02281 39270644
    902957 9gd1:O (4.0) BS01 dna N/A N/A P84233 39270644
    902958 9gd1:O (4.0) BS02 dna N/A N/A P84233 39270644
    902959 9gd1:P (4.0) BS01 dna N/A N/A P62799 39270644
    902960 9gd1:P (4.0) BS02 dna N/A N/A P62799 39270644
    902961 9gd1:W (4.0) BS01 dna N/A N/A P32657 39270644
    902962 9gd1:W (4.0) BS02 dna N/A N/A P32657 39270644
    902963 9gd1:W (4.0) BS03 ADP N/A N/A P32657 39270644
    902964 9gd1:W (4.0) BS04 BEF N/A N/A P32657 39270644
    902965 9gd1:W (4.0) BS05 MG N/A N/A P32657 39270644
    902966 9gd2:A (4.2) BS01 dna N/A N/A P84233 39270644
    902967 9gd2:A (4.2) BS02 dna N/A N/A P84233 39270644
    902968 9gd2:B (4.2) BS01 dna N/A N/A P62799 39270644
    902969 9gd2:B (4.2) BS02 dna N/A N/A P62799 39270644
    902970 9gd2:C (4.2) BS01 dna N/A N/A P06897 39270644
    902971 9gd2:C (4.2) BS02 dna N/A N/A P06897 39270644
    902972 9gd2:C (4.2) BS03 peptide N/A N/A P06897 39270644
    902973 9gd2:D (4.2) BS01 dna N/A N/A P02281 39270644
    902974 9gd2:D (4.2) BS02 peptide N/A N/A P02281 39270644
    902975 9gd2:E (4.2) BS01 dna N/A N/A P84233 39270644
    902976 9gd2:E (4.2) BS02 dna N/A N/A P84233 39270644
    902977 9gd2:E (4.2) BS03 peptide N/A N/A P84233 39270644
    902978 9gd2:F (4.2) BS01 dna N/A N/A P62799 39270644
    902979 9gd2:F (4.2) BS02 dna N/A N/A P62799 39270644
    902980 9gd2:G (4.2) BS01 dna N/A N/A P06897 39270644
    902981 9gd2:G (4.2) BS02 dna N/A N/A P06897 39270644
    902982 9gd2:H (4.2) BS01 dna N/A N/A P02281 39270644
    902983 9gd2:H (4.2) BS02 dna N/A N/A P02281 39270644
    902984 9gd2:K (4.2) BS01 dna N/A N/A P84233 39270644
    902985 9gd2:K (4.2) BS02 dna N/A N/A P84233 39270644
    902986 9gd2:L (4.2) BS01 dna N/A N/A P62799 39270644
    902987 9gd2:L (4.2) BS02 dna N/A N/A P62799 39270644
    902988 9gd2:M (4.2) BS01 dna N/A N/A P06897 39270644
    902989 9gd2:M (4.2) BS02 dna N/A N/A P06897 39270644
    902990 9gd2:N (4.2) BS01 dna N/A N/A P02281 39270644
    902991 9gd2:O (4.2) BS01 dna N/A N/A P84233 39270644
    902992 9gd2:O (4.2) BS02 dna N/A N/A P84233 39270644
    902993 9gd2:P (4.2) BS01 dna N/A N/A P62799 39270644
    902994 9gd2:P (4.2) BS02 dna N/A N/A P62799 39270644
    902995 9gd2:Q (4.2) BS01 peptide N/A N/A P02281 39270644
    902996 9gd2:R (4.2) BS01 peptide N/A N/A P06897 39270644
    902997 9gd2:W (4.2) BS01 dna N/A N/A P32657 39270644
    902998 9gd2:W (4.2) BS02 dna N/A N/A P32657 39270644
    902999 9gd2:W (4.2) BS03 peptide N/A N/A P32657 39270644
    903000 9gd2:W (4.2) BS04 ADP N/A N/A P32657 39270644
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218