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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    900801 9cts:A (2.45) BS02 CA N/A N/A O76090 39277606
    900802 9cts:A (2.45) BS03 ABU N/A N/A O76090 39277606
    900803 9cts:B (2.45) BS01 CA N/A N/A O76090 39277606
    900804 9cts:B (2.45) BS02 ABU N/A N/A O76090 39277606
    900805 9cts:B (2.45) BS03 ABU N/A N/A O76090 39277606
    900806 9cts:C (2.45) BS01 CA N/A N/A O76090 39277606
    900807 9cts:C (2.45) BS02 ABU N/A N/A O76090 39277606
    900808 9cts:D (2.45) BS01 ABU N/A N/A O76090 39277606
    900809 9cts:D (2.45) BS02 CA N/A N/A O76090 39277606
    900810 9cts:E (2.45) BS01 CA N/A N/A O76090 39277606
    900811 9cts:E (2.45) BS02 ABU N/A N/A O76090 39277606
    900812 9cts:E (2.45) BS03 ABU N/A N/A O76090 39277606
    900813 9ctt:A (2.5) BS01 CA N/A N/A O76090 39277606
    900814 9ctt:B (2.5) BS01 CA N/A N/A O76090 39277606
    900815 9ctt:C (2.5) BS01 CA N/A N/A O76090 39277606
    900816 9ctt:D (2.5) BS01 CA N/A N/A O76090 39277606
    900817 9ctt:E (2.5) BS01 CA N/A N/A O76090 39277606
    900818 9ctx:A (1.55) BS01 017 N/A N/A O38893 N/A
    900819 9cu9:A (1.9) BS01 THP N/A N/A Q5HHM4 N/A
    900820 9cu9:A (1.9) BS02 CA N/A N/A Q5HHM4 N/A
    900821 9cuo:A (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    900822 9cuo:A (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    900823 9cuo:B (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    900824 9cuo:B (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    900825 9cuo:C (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    900826 9cuo:C (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    900827 9cuo:D (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    900828 9cuo:D (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    900829 9cuo:E (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    900830 9cuo:E (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    900831 9cuo:F (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    900832 9cuo:F (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    900833 9cuz:1 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900834 9cuz:2 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900835 9cuz:3 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900836 9cuz:4 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900837 9cuz:5 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900838 9cuz:6 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900839 9cuz:7 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900840 9cuz:8 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900841 9cuz:A (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900842 9cuz:B (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900843 9cuz:C (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900844 9cuz:D (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900845 9cuz:E (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900846 9cuz:F (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900847 9cuz:G (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900848 9cuz:H (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900849 9cuz:I (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900850 9cuz:J (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900851 9cuz:K (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900852 9cuz:L (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900853 9cuz:M (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900854 9cuz:N (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900855 9cuz:O (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900856 9cuz:P (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900857 9cuz:Q (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900858 9cuz:R (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900859 9cuz:S (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900860 9cuz:T (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900861 9cuz:U (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900862 9cuz:V (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900863 9cuz:W (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900864 9cuz:X (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900865 9cuz:Y (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900866 9cuz:Z (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900867 9cuz:a (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900868 9cuz:b (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900869 9cuz:c (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900870 9cuz:d (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900871 9cuz:e (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900872 9cuz:f (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900873 9cuz:g (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900874 9cuz:h (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900875 9cuz:i (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900876 9cuz:j (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900877 9cuz:k (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900878 9cuz:l (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900879 9cuz:m (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900880 9cuz:n (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900881 9cuz:o (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900882 9cuz:p (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900883 9cuz:q (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900884 9cuz:r (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900885 9cuz:s (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900886 9cuz:t (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900887 9cuz:u (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900888 9cuz:v (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900889 9cuz:w (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900890 9cuz:x (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900891 9cuz:y (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900892 9cuz:z (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    900893 9cwn:A (2.7) BS01 peptide N/A N/A P37231 N/A
    900894 9cwn:A (2.7) BS02 EDK N/A N/A P37231 N/A
    900895 9cyl:A (4.66) BS01 peptide N/A N/A P14434 39209860
    900896 9cyl:B (4.66) BS01 peptide N/A N/A P14483 39209860
    900897 9cym:A (3.84) BS01 peptide N/A N/A P14434 39209860
    900898 9cym:B (3.84) BS01 peptide N/A N/A P14483 39209860
    900899 9cys:A (1.75) BS01 MIE N/A N/A A0A0M7ENE2 N/A
    900900 9d2c:A (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900901 9d2c:A (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900902 9d2c:A (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900903 9d2c:B (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900904 9d2c:B (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900905 9d2c:B (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900906 9d2c:C (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900907 9d2c:C (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900908 9d2c:C (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900909 9d2c:D (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900910 9d2c:D (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900911 9d2c:D (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900912 9d2c:E (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900913 9d2c:E (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900914 9d2c:E (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900915 9d2c:F (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900916 9d2c:F (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900917 9d2c:F (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900918 9d2c:H (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900919 9d2c:H (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900920 9d2c:H (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900921 9d2c:I (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900922 9d2c:I (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900923 9d2c:I (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900924 9d2c:J (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900925 9d2c:J (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900926 9d2c:J (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900927 9d2c:K (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900928 9d2c:K (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900929 9d2c:K (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900930 9d2c:L (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900931 9d2c:L (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900932 9d2c:L (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    900933 9d2c:M (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    900934 9d2c:M (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    900935 9d3e:A (3.02) BS01 CLR N/A N/A N/A 39217154
    900936 9d3e:A (3.02) BS02 EBX N/A N/A N/A 39217154
    900937 9d3e:A (3.02) BS03 A1A1W N/A N/A N/A 39217154
    900938 9d3g:A (3.26) BS01 CLR N/A N/A N/A 39217154
    900939 9d3g:A (3.26) BS02 EBX N/A N/A N/A 39217154
    900940 9d3g:A (3.26) BS03 A1A2A N/A N/A N/A 39217154
    900941 9d6k:A (1.29) BS01 O N/A N/A Q7SID2 38677005
    900942 9d8a:A (1.65) BS01 GDP N/A N/A A0A367K070 N/A
    900943 9d8s:A (2.12) BS01 AMP N/A N/A A3FQ16 N/A
    900944 9d8s:A (2.12) BS02 CA N/A N/A A3FQ16 N/A
    900945 9d8s:A (2.12) BS03 CA N/A N/A A3FQ16 N/A
    900946 9d8s:A (2.12) BS04 MG N/A N/A A3FQ16 N/A
    900947 9d8s:A (2.12) BS05 MG N/A N/A A3FQ16 N/A
    900948 9d93:Oa (2.85) BS01 peptide N/A N/A Q9B096 N/A
    900949 9d93:Oa (2.85) BS02 peptide N/A N/A Q9B096 N/A
    900950 9d93:Ob (2.85) BS01 peptide N/A N/A Q9B096 N/A
    900951 9d93:Ob (2.85) BS02 peptide N/A N/A Q9B096 N/A
    900952 9d93:Oc (2.85) BS01 peptide N/A N/A Q9B096 N/A
    900953 9d93:Oc (2.85) BS02 peptide N/A N/A Q9B096 N/A
    900954 9d9k:A (2.63) BS01 A1A23 N/A N/A Q9HW02 N/A
    900955 9d9k:A (2.63) BS02 A1A23 N/A N/A Q9HW02 N/A
    900956 9de2:A (-1.00) BS01 ZN N/A N/A O75081 N/A
    900957 9de2:A (-1.00) BS02 ZN N/A N/A O75081 N/A
    900958 9dn4:A (1.9) BS01 rna N/A N/A N/A N/A
    900959 9dn4:B (1.9) BS01 rna N/A N/A N/A N/A
    900960 9dn4:C (1.9) BS01 rna N/A N/A N/A N/A
    900961 9dn4:D (1.9) BS01 rna N/A N/A N/A N/A
    900962 9em0:A (2.2) BS01 FMN N/A N/A Q9FEW9 39103552
    900963 9em0:A (2.2) BS02 FMN N/A N/A Q9FEW9 39103552
    900964 9em0:B (2.2) BS01 FMN N/A N/A Q9FEW9 39103552
    900965 9em0:B (2.2) BS02 FMN N/A N/A Q9FEW9 39103552
    900966 9em1:A (1.5) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    900967 9em1:A (1.5) BS02 UK9 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    900968 9em2:A (1.54) BS01 FMN N/A N/A Q9FEW9 39103552
    900969 9em2:A (1.54) BS02 FMN N/A N/A Q9FEW9 39103552
    900970 9em2:B (1.54) BS01 FMN N/A N/A Q9FEW9 39103552
    900971 9em2:B (1.54) BS02 FMN N/A N/A Q9FEW9 39103552
    900972 9em3:A (2.27) BS01 FMN N/A N/A Q9FEW9 39103552
    900973 9em4:A (2.01) BS01 FMN N/A N/A Q9FEW9 39103552
    900974 9em4:A (2.01) BS02 FMN N/A N/A Q9FEW9 39103552
    900975 9em4:A (2.01) BS03 SO4 N/A N/A Q9FEW9 39103552
    900976 9em4:B (2.01) BS01 FMN N/A N/A Q9FEW9 39103552
    900977 9em4:B (2.01) BS02 FMN N/A N/A Q9FEW9 39103552
    900978 9em5:A (1.6) BS01 FMN N/A N/A Q9FEW9 39103552
    900979 9em6:A (1.72) BS01 FMN N/A N/A Q9FEW9 39103552
    900980 9em6:A (1.72) BS02 FMN N/A N/A Q9FEW9 39103552
    900981 9em6:B (1.72) BS01 FMN N/A N/A Q9FEW9 39103552
    900982 9em6:B (1.72) BS02 FMN N/A N/A Q9FEW9 39103552
    900983 9em9:A (3.76) BS01 GNP N/A N/A P73765 39207903
    900984 9em9:B (3.76) BS01 GNP N/A N/A P73765 39207903
    900985 9ema:A (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    900986 9ema:A (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    900987 9ema:A (2.4) BS03 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    900988 9ema:B (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    900989 9ema:B (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    900990 9ema:C (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    900991 9ema:C (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    900992 9ema:D (2.4) BS01 A1H5V 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    900993 9ema:D (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    900994 9ema:E (2.4) BS01 A1H5V 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    900995 9ema:E (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    900996 9ema:F (2.4) BS01 A1H5V 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    900997 9ema:F (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    900998 9emb:A (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    900999 9emb:A (2.98) BS02 PGW ? GO:0000166 ... P03819 N/A
    901000 9emb:B (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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