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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    898601 9b4h:B (3.1) BS02 FUB ? N/A A8J9H7 38552624
    898602 9b4h:B (3.1) BS03 FUB ? N/A A8J9H7 38552624
    898603 9b4h:B (3.1) BS04 FUB ? N/A A8J9H7 38552624
    898604 9b4h:B (3.1) BS05 FUB ? N/A A8J9H7 38552624
    898605 9b4h:B (3.1) BS06 FUB ? N/A A8J9H7 38552624
    898606 9b4h:B (3.1) BS07 FUB ? N/A A8J9H7 38552624
    898607 9b4h:B (3.1) BS08 FUB ? N/A A8J9H7 38552624
    898608 9b4h:B (3.1) BS09 FUB ? N/A A8J9H7 38552624
    898609 9b4h:B (3.1) BS10 FUB ? N/A A8J9H7 38552624
    898610 9b4h:B (3.1) BS11 FUB ? N/A A8J9H7 38552624
    898611 9b4h:B (3.1) BS12 FUB ? N/A A8J9H7 38552624
    898612 9b4h:B (3.1) BS13 FUB ? N/A A8J9H7 38552624
    898613 9b4h:B (3.1) BS14 FUB ? N/A A8J9H7 38552624
    898614 9b4h:B (3.1) BS15 FUB ? N/A A8J9H7 38552624
    898615 9b4h:B (3.1) BS16 FUB ? N/A A8J9H7 38552624
    898616 9b4h:B (3.1) BS17 FUB ? N/A A8J9H7 38552624
    898617 9b4h:B (3.1) BS18 FUB ? N/A A8J9H7 38552624
    898618 9b4h:B (3.1) BS19 FUB ? N/A A8J9H7 38552624
    898619 9b4h:B (3.1) BS20 FUB ? N/A A8J9H7 38552624
    898620 9b4h:B (3.1) BS21 FUB ? N/A A8J9H7 38552624
    898621 9b4h:B (3.1) BS22 A1AIO ? N/A A8J9H7 38552624
    898622 9b4h:B (3.1) BS23 A1AIO ? N/A A8J9H7 38552624
    898623 9b4h:B (3.1) BS24 A1AIO ? N/A A8J9H7 38552624
    898624 9b4h:B (3.1) BS25 A1AIO ? N/A A8J9H7 38552624
    898625 9b4h:B (3.1) BS26 A1AIO ? N/A A8J9H7 38552624
    898626 9b4h:B (3.1) BS27 A1AIO ? N/A A8J9H7 38552624
    898627 9b4h:B (3.1) BS28 A1AIO ? N/A A8J9H7 38552624
    898628 9b4h:B (3.1) BS29 A1AIO ? N/A A8J9H7 38552624
    898629 9b4h:B (3.1) BS30 GLA ? N/A A8J9H7 38552624
    898630 9b4h:B (3.1) BS31 GLA ? N/A A8J9H7 38552624
    898631 9b4h:B (3.1) BS32 GLA ? N/A A8J9H7 38552624
    898632 9b4h:B (3.1) BS33 GLA ? N/A A8J9H7 38552624
    898633 9b4h:B (3.1) BS34 GLA ? N/A A8J9H7 38552624
    898634 9b4h:B (3.1) BS35 GLA ? N/A A8J9H7 38552624
    898635 9b4h:B (3.1) BS36 GLA ? N/A A8J9H7 38552624
    898636 9b4h:B (3.1) BS37 GLA ? N/A A8J9H7 38552624
    898637 9b4h:B (3.1) BS38 GLA ? N/A A8J9H7 38552624
    898638 9b4h:B (3.1) BS39 GLA ? N/A A8J9H7 38552624
    898639 9b55:B (3.23) BS01 A1AIV ? N/A P0CH07 39143218
    898640 9b56:A (3.35) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898641 9b56:B (3.35) BS01 A1AIV ? N/A P0CH07 39143218
    898642 9b57:B (3.37) BS01 A1AIV ? N/A P0CH07 39143218
    898643 9b58:A (3.39) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898644 9b59:C (3.49) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    898645 9b5a:C (3.65) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    898646 9b5b:C (3.31) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    898647 9b5c:A (2.5) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898648 9b5c:A (2.5) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898649 9b5c:C (2.5) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898650 9b5d:A (2.8) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898651 9b5d:A (2.8) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898652 9b5d:C (2.8) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898653 9b5e:A (2.81) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898654 9b5e:A (2.81) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898655 9b5e:C (2.81) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898656 9b5f:A (2.78) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898657 9b5f:A (2.78) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898658 9b5f:C (2.78) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898659 9b5g:A (2.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898660 9b5g:A (2.67) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898661 9b5g:C (2.67) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898662 9b5h:A (2.69) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    898663 9b5h:A (2.69) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    898664 9b5h:A (2.69) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898665 9b5h:C (2.69) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898666 9b5i:A (2.7) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    898667 9b5i:A (2.7) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    898668 9b5i:A (2.7) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898669 9b5j:A (2.86) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    898670 9b5j:A (2.86) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898671 9b5k:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898672 9b5k:C (3.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898673 9b5l:A (3.3) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    898674 9b5l:A (3.3) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898675 9b5l:C (3.3) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898676 9b5m:A (2.79) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898677 9b5m:A (2.79) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898678 9b5m:C (2.79) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898679 9b5n:A (3.12) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898680 9b5n:A (3.12) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898681 9b5n:C (3.12) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898682 9b5o:A (3.19) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898683 9b5o:A (3.19) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898684 9b5o:C (3.19) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898685 9b5p:A (3.08) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898686 9b5p:A (3.08) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898687 9b5p:C (3.08) BS01 peptide 2.3.2.23 GO:0000151 ... P46595 39143218
    898688 9b5p:C (3.08) BS02 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898689 9b5q:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898690 9b5q:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898691 9b5q:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898692 9b5r:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898693 9b5r:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898694 9b5r:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898695 9b5s:A (2.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898696 9b5s:A (2.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898697 9b5t:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898698 9b5t:A (3.16) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898699 9b5u:A (3.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898700 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    898701 9b5v:A (3.94) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898702 9b5v:C (3.94) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898703 9b5w:A (3.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898704 9b5w:A (3.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898705 9b5w:C (3.96) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898706 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    898707 9b5x:A (4.16) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    898708 9b5x:A (4.16) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    898709 9b5x:C (4.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    898710 9b6d:A (3.3) BS01 Y01 N/A N/A Q8R4D5 39093967
    898711 9b6d:A (3.3) BS02 Y01 N/A N/A Q8R4D5 39093967
    898712 9b6d:A (3.3) BS03 Y01 N/A N/A Q8R4D5 39093967
    898713 9b6d:B (3.3) BS01 Y01 N/A N/A Q8R4D5 39093967
    898714 9b6d:B (3.3) BS02 Y01 N/A N/A Q8R4D5 39093967
    898715 9b6d:C (3.3) BS01 Y01 N/A N/A Q8R4D5 39093967
    898716 9b6d:C (3.3) BS02 Y01 N/A N/A Q8R4D5 39093967
    898717 9b6d:D (3.3) BS01 Y01 N/A N/A Q8R4D5 39093967
    898718 9b6d:D (3.3) BS02 Y01 N/A N/A Q8R4D5 39093967
    898719 9b6d:D (3.3) BS03 Y01 N/A N/A Q8R4D5 39093967
    898720 9b6e:A (2.91) BS01 Y01 N/A N/A Q8R4D5 39093967
    898721 9b6e:A (2.91) BS02 T14 N/A N/A Q8R4D5 39093967
    898722 9b6e:B (2.91) BS01 T14 N/A N/A Q8R4D5 39093967
    898723 9b6e:B (2.91) BS02 Y01 N/A N/A Q8R4D5 39093967
    898724 9b6e:C (2.91) BS01 T14 N/A N/A Q8R4D5 39093967
    898725 9b6e:C (2.91) BS02 Y01 N/A N/A Q8R4D5 39093967
    898726 9b6e:D (2.91) BS01 T14 N/A N/A Q8R4D5 39093967
    898727 9b6e:D (2.91) BS02 Y01 N/A N/A Q8R4D5 39093967
    898728 9b6f:A (3.42) BS01 Y01 N/A N/A Q8R4D5 39093967
    898729 9b6f:A (3.42) BS02 Y01 N/A N/A Q8R4D5 39093967
    898730 9b6f:A (3.42) BS03 A1AIY N/A N/A Q8R4D5 39093967
    898731 9b6f:B (3.42) BS01 A1AIY N/A N/A Q8R4D5 39093967
    898732 9b6f:B (3.42) BS02 Y01 N/A N/A Q8R4D5 39093967
    898733 9b6f:B (3.42) BS03 Y01 N/A N/A Q8R4D5 39093967
    898734 9b6f:C (3.42) BS01 A1AIY N/A N/A Q8R4D5 39093967
    898735 9b6f:C (3.42) BS02 Y01 N/A N/A Q8R4D5 39093967
    898736 9b6f:C (3.42) BS03 Y01 N/A N/A Q8R4D5 39093967
    898737 9b6f:D (3.42) BS01 A1AIY N/A N/A Q8R4D5 39093967
    898738 9b6f:D (3.42) BS02 Y01 N/A N/A Q8R4D5 39093967
    898739 9b6f:D (3.42) BS03 Y01 N/A N/A Q8R4D5 39093967
    898740 9b6g:A (2.81) BS01 Y01 N/A N/A Q8R4D5 39093967
    898741 9b6g:A (2.81) BS02 Y01 N/A N/A Q8R4D5 39093967
    898742 9b6g:A (2.81) BS03 Y01 N/A N/A Q8R4D5 39093967
    898743 9b6g:A (2.81) BS04 LQ7 N/A N/A Q8R4D5 39093967
    898744 9b6g:A (2.81) BS05 Y01 N/A N/A Q8R4D5 39093967
    898745 9b6g:A (2.81) BS06 Y01 N/A N/A Q8R4D5 39093967
    898746 9b6g:B (2.81) BS01 Y01 N/A N/A Q8R4D5 39093967
    898747 9b6g:B (2.81) BS02 Y01 N/A N/A Q8R4D5 39093967
    898748 9b6g:B (2.81) BS03 Y01 N/A N/A Q8R4D5 39093967
    898749 9b6g:B (2.81) BS04 Y01 N/A N/A Q8R4D5 39093967
    898750 9b6g:B (2.81) BS05 Y01 N/A N/A Q8R4D5 39093967
    898751 9b6g:B (2.81) BS06 LQ7 N/A N/A Q8R4D5 39093967
    898752 9b6g:C (2.81) BS01 Y01 N/A N/A Q8R4D5 39093967
    898753 9b6g:C (2.81) BS02 Y01 N/A N/A Q8R4D5 39093967
    898754 9b6g:C (2.81) BS03 Y01 N/A N/A Q8R4D5 39093967
    898755 9b6g:C (2.81) BS04 Y01 N/A N/A Q8R4D5 39093967
    898756 9b6g:C (2.81) BS05 Y01 N/A N/A Q8R4D5 39093967
    898757 9b6g:C (2.81) BS06 LQ7 N/A N/A Q8R4D5 39093967
    898758 9b6g:D (2.81) BS01 Y01 N/A N/A Q8R4D5 39093967
    898759 9b6g:D (2.81) BS02 Y01 N/A N/A Q8R4D5 39093967
    898760 9b6g:D (2.81) BS03 Y01 N/A N/A Q8R4D5 39093967
    898761 9b6g:D (2.81) BS04 Y01 N/A N/A Q8R4D5 39093967
    898762 9b6g:D (2.81) BS05 Y01 N/A N/A Q8R4D5 39093967
    898763 9b6g:D (2.81) BS06 LQ7 N/A N/A Q8R4D5 39093967
    898764 9b6h:A (2.76) BS01 Y01 N/A N/A Q8R4D5 39093967
    898765 9b6h:A (2.76) BS02 Y01 N/A N/A Q8R4D5 39093967
    898766 9b6h:A (2.76) BS03 ULO N/A N/A Q8R4D5 39093967
    898767 9b6h:A (2.76) BS04 T14 N/A N/A Q8R4D5 39093967
    898768 9b6h:A (2.76) BS05 Y01 N/A N/A Q8R4D5 39093967
    898769 9b6h:B (2.76) BS01 T14 N/A N/A Q8R4D5 39093967
    898770 9b6h:B (2.76) BS02 Y01 N/A N/A Q8R4D5 39093967
    898771 9b6h:B (2.76) BS03 Y01 N/A N/A Q8R4D5 39093967
    898772 9b6h:B (2.76) BS04 Y01 N/A N/A Q8R4D5 39093967
    898773 9b6h:B (2.76) BS05 ULO N/A N/A Q8R4D5 39093967
    898774 9b6h:C (2.76) BS01 T14 N/A N/A Q8R4D5 39093967
    898775 9b6h:C (2.76) BS02 Y01 N/A N/A Q8R4D5 39093967
    898776 9b6h:C (2.76) BS03 Y01 N/A N/A Q8R4D5 39093967
    898777 9b6h:C (2.76) BS04 Y01 N/A N/A Q8R4D5 39093967
    898778 9b6h:C (2.76) BS05 ULO N/A N/A Q8R4D5 39093967
    898779 9b6h:D (2.76) BS01 T14 N/A N/A Q8R4D5 39093967
    898780 9b6h:D (2.76) BS02 Y01 N/A N/A Q8R4D5 39093967
    898781 9b6h:D (2.76) BS03 Y01 N/A N/A Q8R4D5 39093967
    898782 9b6h:D (2.76) BS04 Y01 N/A N/A Q8R4D5 39093967
    898783 9b6h:D (2.76) BS05 ULO N/A N/A Q8R4D5 39093967
    898784 9b6i:A (3.26) BS01 Y01 N/A N/A N/A 39093967
    898785 9b6i:A (3.26) BS02 Y01 N/A N/A N/A 39093967
    898786 9b6i:A (3.26) BS03 Y01 N/A N/A N/A 39093967
    898787 9b6i:A (3.26) BS04 T14 N/A N/A N/A 39093967
    898788 9b6i:A (3.26) BS05 Y01 N/A N/A N/A 39093967
    898789 9b6i:A (3.26) BS06 Y01 N/A N/A N/A 39093967
    898790 9b6i:A (3.26) BS07 T14 N/A N/A N/A 39093967
    898791 9b6i:B (3.26) BS01 Y01 N/A N/A N/A 39093967
    898792 9b6i:B (3.26) BS02 T14 N/A N/A N/A 39093967
    898793 9b6i:B (3.26) BS03 Y01 N/A N/A N/A 39093967
    898794 9b6i:B (3.26) BS04 Y01 N/A N/A N/A 39093967
    898795 9b6i:B (3.26) BS05 Y01 N/A N/A N/A 39093967
    898796 9b6i:B (3.26) BS06 T14 N/A N/A N/A 39093967
    898797 9b6i:B (3.26) BS07 Y01 N/A N/A N/A 39093967
    898798 9b6i:C (3.26) BS01 Y01 N/A N/A N/A 39093967
    898799 9b6i:C (3.26) BS02 T14 N/A N/A N/A 39093967
    898800 9b6i:C (3.26) BS03 Y01 N/A N/A N/A 39093967
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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