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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897401 8zrz:A (1.26) BS05 BGC N/A N/A P36924 N/A
    897402 8zrz:A (1.26) BS06 GLC N/A N/A P36924 N/A
    897403 8zrz:A (1.26) BS07 GLC N/A N/A P36924 N/A
    897404 8zrz:A (1.26) BS08 GLC N/A N/A P36924 N/A
    897405 8zrz:A (1.26) BS09 GLC N/A N/A P36924 N/A
    897406 8zrz:A (1.26) BS10 GLC N/A N/A P36924 N/A
    897407 8zrz:A (1.26) BS11 CA N/A N/A P36924 N/A
    897408 8zrz:A (1.26) BS12 BGC N/A N/A P36924 N/A
    897409 8zsb:A (3.26) BS01 ZN N/A N/A Q9Y6M5 39111308
    897410 8zsb:B (3.26) BS01 ZN N/A N/A Q9Y6M5 39111308
    897411 8zsp:R (3.14) BS01 7LD N/A GO:0001594 ... P0ABE7
    Q96RJ0    		 39002128
    897412 8zss:R (3.07) BS01 A1D8X N/A GO:0001594 ... P0ABE7
    Q96RJ0    		 39002128
    897413 8zsv:R (2.96) BS01 A1D8X N/A GO:0001594 ... P0ABE7
    Q923Y8    		 39002128
    897414 8zsz:A (3.59) BS01 ZN N/A N/A Q9Y6M5 39111308
    897415 8zsz:A (3.59) BS02 ZN N/A N/A Q9Y6M5 39111308
    897416 8zsz:A (3.59) BS03 ZN N/A N/A Q9Y6M5 39111308
    897417 8zsz:A (3.59) BS04 ZN N/A N/A Q9Y6M5 39111308
    897418 8zsz:A (3.59) BS05 ZN N/A N/A Q9Y6M5 39111308
    897419 8zsz:B (3.59) BS01 ZN N/A N/A Q9Y6M5 39111308
    897420 8zsz:B (3.59) BS02 ZN N/A N/A Q9Y6M5 39111308
    897421 8zsz:B (3.59) BS03 ZN N/A N/A Q9Y6M5 39111308
    897422 8zsz:B (3.59) BS04 ZN N/A N/A Q9Y6M5 39111308
    897423 8zsz:B (3.59) BS05 ZN N/A N/A Q9Y6M5 39111308
    897424 8ztx:A (1.70033) BS01 A1D83 N/A N/A Q99640 39163619
    897425 8zu2:A (1.79889) BS01 A1D85 N/A N/A Q99640 39163619
    897426 8zud:A (1.5051) BS01 A1D82 N/A N/A Q99640 39163619
    897427 8zuh:A (3.2) BS01 BMA N/A N/A Q3SX24 39171510
    897428 8zuh:A (3.2) BS02 MAN N/A N/A Q3SX24 39171510
    897429 8zuh:B (3.2) BS01 MAN N/A N/A Q3ZCF3 39171510
    897430 8zuh:C (3.2) BS01 BMA N/A N/A Q3SX24 39171510
    897431 8zuh:C (3.2) BS02 MAN N/A N/A Q3SX24 39171510
    897432 8zul:A (1.80026) BS01 A1D84 N/A N/A Q99640 39163619
    897433 8zv9:A (2.6) BS01 peptide N/A N/A A0A7T3RIT5 39002680
    897434 8zv9:D (2.6) BS01 peptide N/A N/A A0A7T3RIT5 39002680
    897435 8zv9:D (2.6) BS02 peptide N/A N/A A0A7T3RIT5 39002680
    897436 8zv9:G (2.6) BS01 peptide N/A N/A A0A7T3RIT5 39002680
    897437 8zwv:A (1.5) BS01 V7Z N/A GO:0002009 ... P00918 N/A
    897438 8zwv:A (1.5) BS02 ZN N/A GO:0002009 ... P00918 N/A
    897439 8zyc:B (2.99) BS01 rna N/A N/A Q0T963 N/A
    897440 8zyd:B (3.04) BS01 rna N/A N/A Q0T963 N/A
    897441 8zyg:A (1.08) BS01 CU N/A N/A Q9X1H0 N/A
    897442 8zyg:B (1.08) BS01 CU N/A N/A Q9X1H0 N/A
    897443 8zyh:A (1.07) BS01 CU N/A N/A Q9X1H0 N/A
    897444 8zyh:B (1.07) BS01 CU N/A N/A Q9X1H0 N/A
    897445 8zyo:A (3.29) BS01 XB7 N/A N/A Q12809 N/A
    897446 8zyo:B (3.29) BS01 XB7 N/A N/A Q12809 N/A
    897447 8zyo:D (3.29) BS01 XB7 N/A N/A Q12809 N/A
    897448 8zyp:A (3.19) BS01 A1L2J N/A N/A Q12809 N/A
    897449 8zyp:C (3.19) BS01 A1L2J N/A N/A Q12809 N/A
    897450 8zyp:D (3.19) BS01 A1L2J N/A N/A Q12809 N/A
    897451 8zyq:A (3.18) BS01 1II N/A N/A Q12809 N/A
    897452 8zyq:B (3.18) BS01 1II N/A N/A Q12809 N/A
    897453 8zyq:C (3.18) BS01 1II N/A N/A Q12809 N/A
    897454 8zyq:D (3.18) BS01 1II N/A N/A Q12809 N/A
    897455 966c:A (1.9) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 10074939
    897456 966c:A (1.9) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 10074939
    897457 966c:A (1.9) BS03 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    897458 966c:A (1.9) BS04 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    897459 966c:A (1.9) BS05 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    897460 966c:A (1.9) BS06 RS2 3.4.24.7 GO:0004222 ... P03956 10074939 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    897461 9aat:A (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    897462 9aat:B (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    897463 9abp:A (1.97) BS01 GLA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.01uM
    897464 9abp:A (1.97) BS02 GAL ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    897465 9ant:A (2.4) BS01 dna ? GO:0000981 ... P02833 9699632
    897466 9ant:A (2.4) BS02 dna ? GO:0000981 ... P02833 9699632
    897467 9ant:B (2.4) BS01 dna ? GO:0000981 ... P02833 9699632
    897468 9ant:B (2.4) BS02 dna ? GO:0000981 ... P02833 9699632
    897469 9api:A (3.0) BS01 CYS ? GO:0004867 ... P01009 2785270
    897470 9are:A (3.72) BS01 GLY N/A N/A P35439 N/A
    897471 9are:B (3.72) BS01 GLU N/A N/A Q00960 N/A
    897472 9are:C (3.72) BS01 GLY N/A N/A P35439 N/A
    897473 9are:D (3.72) BS01 GLU N/A N/A Q00960 N/A
    897474 9arf:A (3.13) BS01 GLY N/A N/A P35439 N/A
    897475 9arf:B (3.13) BS01 GLU N/A N/A Q00960 N/A
    897476 9arf:C (3.13) BS01 GLY N/A N/A P35439 N/A
    897477 9arf:D (3.13) BS01 GLU N/A N/A Q00960 N/A
    897478 9arh:A (3.69) BS01 GLY N/A N/A P35439 N/A
    897479 9arh:C (3.69) BS01 GLY N/A N/A P35439 N/A
    897480 9ari:B (3.9) BS01 GLU N/A N/A Q00960 N/A
    897481 9ari:D (3.9) BS01 GLU N/A N/A Q00960 N/A
    897482 9arq:A (2.0) BS01 T2L 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    897483 9ars:A (2.4) BS01 T2L 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    897484 9ars:B (2.4) BS01 T2L 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    897485 9art:A (1.49) BS01 V7G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    897486 9art:D (1.49) BS01 V7G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    897487 9asb:Q (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    897488 9asb:Q (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    897489 9asb:Q (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    897490 9asb:Q (3.4) BS04 9IG ? GO:0004930 ... P41180 38632411
    897491 9asb:Q (3.4) BS05 Y01 ? GO:0004930 ... P41180 38632411
    897492 9asb:Q (3.4) BS06 A1AF7 ? GO:0004930 ... P41180 38632411
    897493 9asb:R (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    897494 9asb:R (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    897495 9asb:R (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    897496 9asb:R (3.4) BS04 9IG ? GO:0004930 ... P41180 38632411
    897497 9asb:R (3.4) BS05 A1AF7 ? GO:0004930 ... P41180 38632411
    897498 9ash:A (2.58) BS01 rna N/A N/A L0CEJ3 38989619
    897499 9ash:A (2.58) BS02 rna N/A N/A L0CEJ3 38989619
    897500 9ash:A (2.58) BS03 rna N/A N/A L0CEJ3 38989619
    897501 9ash:A (2.58) BS04 ATP N/A N/A L0CEJ3 38989619
    897502 9ash:A (2.58) BS05 MG N/A N/A L0CEJ3 38989619
    897503 9ash:A (2.58) BS06 MG N/A N/A L0CEJ3 38989619
    897504 9ash:A (2.58) BS07 MG N/A N/A L0CEJ3 38989619
    897505 9ash:B (2.58) BS01 rna N/A N/A L0CFH1 38989619
    897506 9ash:B (2.58) BS02 rna N/A N/A L0CFH1 38989619
    897507 9ash:D (2.58) BS01 rna N/A N/A L0CFW2 38989619
    897508 9ash:F (2.58) BS01 rna N/A N/A L0CEA3 38989619
    897509 9ash:F (2.58) BS02 rna N/A N/A L0CEA3 38989619
    897510 9ash:G (2.58) BS01 rna N/A N/A L0CEA3 38989619
    897511 9ash:G (2.58) BS02 rna N/A N/A L0CEA3 38989619
    897512 9ash:H (2.58) BS01 rna N/A N/A L0CEA3 38989619
    897513 9ash:H (2.58) BS02 rna N/A N/A L0CEA3 38989619
    897514 9ash:I (2.58) BS01 rna N/A N/A L0CEA3 38989619
    897515 9ash:I (2.58) BS02 rna N/A N/A L0CEA3 38989619
    897516 9ash:J (2.58) BS01 rna N/A N/A L0CG31 38989619
    897517 9asi:A (2.79) BS01 rna N/A N/A L0CEJ3 38989619
    897518 9asi:A (2.79) BS02 rna N/A N/A L0CEJ3 38989619
    897519 9asi:A (2.79) BS03 ATP N/A N/A L0CEJ3 38989619
    897520 9asi:A (2.79) BS04 MG N/A N/A L0CEJ3 38989619
    897521 9asi:A (2.79) BS05 ATP N/A N/A L0CEJ3 38989619
    897522 9asi:A (2.79) BS06 AMP N/A N/A L0CEJ3 38989619
    897523 9asi:B (2.79) BS01 rna N/A N/A L0CFH1 38989619
    897524 9asi:B (2.79) BS02 rna N/A N/A L0CFH1 38989619
    897525 9asi:C (2.79) BS01 rna N/A N/A L0CFW2 38989619
    897526 9asi:D (2.79) BS01 rna N/A N/A L0CFW2 38989619
    897527 9asi:E (2.79) BS01 rna N/A N/A L0CFW2 38989619
    897528 9asi:F (2.79) BS01 rna N/A N/A L0CEA3 38989619
    897529 9asi:F (2.79) BS02 rna N/A N/A L0CEA3 38989619
    897530 9asi:G (2.79) BS01 rna N/A N/A L0CEA3 38989619
    897531 9asi:G (2.79) BS02 rna N/A N/A L0CEA3 38989619
    897532 9asi:H (2.79) BS01 rna N/A N/A L0CEA3 38989619
    897533 9asi:H (2.79) BS02 rna N/A N/A L0CEA3 38989619
    897534 9asi:I (2.79) BS01 rna N/A N/A L0CEA3 38989619
    897535 9asi:I (2.79) BS02 rna N/A N/A L0CEA3 38989619
    897536 9asi:J (2.79) BS01 rna N/A N/A L0CG31 38989619
    897537 9asj:A (3.5) BS01 ANP N/A N/A O75417 38895274
    897538 9asj:B (3.5) BS01 ANP N/A N/A O75417 38895274
    897539 9asm:A (2.8) BS01 peptide N/A N/A Q9NRR4 N/A
    897540 9asm:A (2.8) BS02 rna N/A N/A Q9NRR4 N/A
    897541 9asm:A (2.8) BS03 ZN N/A N/A Q9NRR4 N/A
    897542 9asm:A (2.8) BS04 ZN N/A N/A Q9NRR4 N/A
    897543 9asm:A (2.8) BS05 CA N/A N/A Q9NRR4 N/A
    897544 9asm:A (2.8) BS06 CA N/A N/A Q9NRR4 N/A
    897545 9asm:B (2.8) BS01 rna N/A N/A Q8WYQ5 N/A
    897546 9asn:A (3.2) BS01 peptide N/A N/A Q9NRR4 N/A
    897547 9asn:A (3.2) BS02 rna N/A N/A Q9NRR4 N/A
    897548 9asn:A (3.2) BS03 ZN N/A N/A Q9NRR4 N/A
    897549 9asn:A (3.2) BS04 ZN N/A N/A Q9NRR4 N/A
    897550 9asn:A (3.2) BS05 CA N/A N/A Q9NRR4 N/A
    897551 9asn:A (3.2) BS06 CA N/A N/A Q9NRR4 N/A
    897552 9asn:B (3.2) BS01 rna N/A N/A Q8WYQ5 N/A
    897553 9aso:A (2.9) BS01 peptide N/A N/A Q9NRR4 N/A
    897554 9aso:A (2.9) BS02 peptide N/A N/A Q9NRR4 N/A
    897555 9aso:A (2.9) BS03 rna N/A N/A Q9NRR4 N/A
    897556 9aso:A (2.9) BS04 ZN N/A N/A Q9NRR4 N/A
    897557 9aso:A (2.9) BS05 ZN N/A N/A Q9NRR4 N/A
    897558 9aso:A (2.9) BS06 CA N/A N/A Q9NRR4 N/A
    897559 9aso:A (2.9) BS07 CA N/A N/A Q9NRR4 N/A
    897560 9asp:A (3.2) BS01 rna N/A N/A Q9NRR4 N/A
    897561 9asp:A (3.2) BS02 ZN N/A N/A Q9NRR4 N/A
    897562 9asp:A (3.2) BS03 ZN N/A N/A Q9NRR4 N/A
    897563 9asp:A (3.2) BS04 CA N/A N/A Q9NRR4 N/A
    897564 9asp:B (3.2) BS01 rna N/A N/A Q8WYQ5 N/A
    897565 9asp:C (3.2) BS01 rna N/A N/A Q8WYQ5 N/A
    897566 9asq:A (3.0) BS01 peptide N/A N/A Q9NRR4 N/A
    897567 9asq:A (3.0) BS02 rna N/A N/A Q9NRR4 N/A
    897568 9asq:A (3.0) BS03 ZN N/A N/A Q9NRR4 N/A
    897569 9asq:A (3.0) BS04 ZN N/A N/A Q9NRR4 N/A
    897570 9asq:A (3.0) BS05 CA N/A N/A Q9NRR4 N/A
    897571 9asq:A (3.0) BS06 CA N/A N/A Q9NRR4 N/A
    897572 9asq:B (3.0) BS01 rna N/A N/A Q8WYQ5 N/A
    897573 9asq:H (3.0) BS01 rna N/A N/A P84103 N/A
    897574 9ass:A (1.75) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897575 9ass:A (1.75) BS02 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897576 9asv:A (1.8) BS01 A1AGE N/A N/A P0DTD1 38953866
    897577 9asv:A (1.8) BS02 A1AGF N/A N/A P0DTD1 38953866
    897578 9asv:B (1.8) BS01 A1AGE N/A N/A P0DTD1 38953866
    897579 9asv:B (1.8) BS02 A1AGF N/A N/A P0DTD1 38953866
    897580 9asw:A (1.75) BS01 A1AGB N/A N/A P0DTD1 38953866
    897581 9asw:A (1.75) BS02 A1AGA N/A N/A P0DTD1 38953866
    897582 9asw:B (1.75) BS01 A1AGA N/A N/A P0DTD1 38953866
    897583 9asw:B (1.75) BS02 A1AGB N/A N/A P0DTD1 38953866
    897584 9asx:B (1.96) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897585 9asx:B (1.96) BS02 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897586 9asy:A (1.8) BS01 A1AGI N/A N/A P0DTD1 38953866
    897587 9asy:A (1.8) BS02 A1AGJ N/A N/A P0DTD1 38953866
    897588 9asy:B (1.8) BS01 A1AGI N/A N/A P0DTD1 38953866
    897589 9asy:B (1.8) BS02 A1AGJ N/A N/A P0DTD1 38953866
    897590 9asz:A (1.95) BS01 A1AGG N/A N/A P0DTD1 38953866
    897591 9asz:B (1.95) BS01 A1AGG N/A N/A P0DTD1 38953866
    897592 9at0:A (1.85) BS01 A1AGX N/A N/A P0DTD1 38953866
    897593 9at0:A (1.85) BS02 A1AGW N/A N/A P0DTD1 38953866
    897594 9at0:B (1.85) BS01 A1AGX N/A N/A P0DTD1 38953866
    897595 9at0:B (1.85) BS02 A1AGW N/A N/A P0DTD1 38953866
    897596 9at1:A (1.9) BS01 A1AGZ N/A N/A P0DTD1 38953866
    897597 9at1:B (1.9) BS01 A1AGZ N/A N/A P0DTD1 38953866
    897598 9at2:A (2.25) BS01 HEM N/A N/A P48775 39106326
    897599 9at2:A (2.25) BS02 ZIQ N/A N/A P48775 39106326
    897600 9at2:A (2.25) BS03 A1AF5 N/A N/A P48775 39106326
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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