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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    892801 8xkl:p (2.84) BS13 CLA N/A N/A N/A 38806516
    892802 8xkl:p (2.84) BS14 KC2 N/A N/A N/A 38806516
    892803 8xkl:p (2.84) BS15 CLA N/A N/A N/A 38806516
    892804 8xkl:p (2.84) BS16 CLA N/A N/A N/A 38806516
    892805 8xkl:p (2.84) BS17 II0 N/A N/A N/A 38806516
    892806 8xkl:p (2.84) BS18 II0 N/A N/A N/A 38806516
    892807 8xkl:p (2.84) BS19 II0 N/A N/A N/A 38806516
    892808 8xkl:p (2.84) BS20 IHT N/A N/A N/A 38806516
    892809 8xkl:p (2.84) BS21 CLA N/A N/A N/A 38806516
    892810 8xkl:s (2.84) BS01 CLA N/A N/A N/A 38806516
    892811 8xkl:s (2.84) BS02 CLA N/A N/A N/A 38806516
    892812 8xkl:s (2.84) BS03 CLA N/A N/A N/A 38806516
    892813 8xkl:s (2.84) BS04 CLA N/A N/A N/A 38806516
    892814 8xkl:s (2.84) BS05 CLA N/A N/A N/A 38806516
    892815 8xkl:s (2.84) BS06 CLA N/A N/A N/A 38806516
    892816 8xku:A (3.2) BS01 peptide N/A N/A F4KF14 39197452
    892817 8xku:A (3.2) BS02 ATP N/A N/A F4KF14 39197452
    892818 8xku:B (3.2) BS01 peptide N/A N/A Q9SAJ3 39197452
    892819 8xku:B (3.2) BS02 ZN N/A N/A Q9SAJ3 39197452
    892820 8xku:B (3.2) BS03 ATP N/A N/A Q9SAJ3 39197452
    892821 8xku:C (3.2) BS01 peptide N/A N/A F4J3N2 39197452
    892822 8xku:C (3.2) BS02 peptide N/A N/A F4J3N2 39197452
    892823 8xku:D (3.2) BS01 peptide N/A N/A P56786 39197452
    892824 8xku:F (3.2) BS01 ATP N/A N/A A8MPR5 39197452
    892825 8xku:R (3.2) BS01 peptide N/A N/A F4JYR0 39197452
    892826 8xku:R (3.2) BS02 peptide N/A N/A F4JYR0 39197452
    892827 8xku:R (3.2) BS03 ZN N/A N/A F4JYR0 39197452
    892828 8xku:R (3.2) BS04 ZN N/A N/A F4JYR0 39197452
    892829 8xkv:A (3.3) BS01 peptide N/A N/A F4KF14 39197452
    892830 8xkv:B (3.3) BS01 peptide N/A N/A Q9SAJ3 39197452
    892831 8xkv:B (3.3) BS02 ZN N/A N/A Q9SAJ3 39197452
    892832 8xkv:C (3.3) BS01 peptide N/A N/A F4J3N2 39197452
    892833 8xkv:R (3.3) BS01 peptide N/A N/A F4JYR0 39197452
    892834 8xkv:R (3.3) BS02 peptide N/A N/A F4JYR0 39197452
    892835 8xkv:R (3.3) BS03 ZN N/A N/A F4JYR0 39197452
    892836 8xkv:R (3.3) BS04 ZN N/A N/A F4JYR0 39197452
    892837 8xld:A (2.1) BS01 ZN ? GO:0006091 ... A0A8S0GSD4 N/A
    892838 8xlm:D (3.22) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38961765
    892839 8xln:D (3.78) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38961765
    892840 8xlo:A (2.36) BS01 A1LVQ 2.7.10.1 GO:0004672 ... P11362 38432058
    892841 8xlo:B (2.36) BS01 A1LVQ 2.7.10.1 GO:0004672 ... P11362 38432058
    892842 8xlp:1 (2.57) BS01 II0 N/A N/A N/A N/A
    892843 8xlp:1 (2.57) BS02 CLA N/A N/A N/A N/A
    892844 8xlp:1 (2.57) BS03 CLA N/A N/A N/A N/A
    892845 8xlp:1 (2.57) BS04 CLA N/A N/A N/A N/A
    892846 8xlp:1 (2.57) BS05 CLA N/A N/A N/A N/A
    892847 8xlp:1 (2.57) BS06 KC2 N/A N/A N/A N/A
    892848 8xlp:1 (2.57) BS07 CLA N/A N/A N/A N/A
    892849 8xlp:1 (2.57) BS08 CLA N/A N/A N/A N/A
    892850 8xlp:1 (2.57) BS09 CLA N/A N/A N/A N/A
    892851 8xlp:1 (2.57) BS10 CLA N/A N/A N/A N/A
    892852 8xlp:1 (2.57) BS11 KC2 N/A N/A N/A N/A
    892853 8xlp:1 (2.57) BS12 KC2 N/A N/A N/A N/A
    892854 8xlp:1 (2.57) BS13 KC2 N/A N/A N/A N/A
    892855 8xlp:1 (2.57) BS14 CLA N/A N/A N/A N/A
    892856 8xlp:1 (2.57) BS15 CLA N/A N/A N/A N/A
    892857 8xlp:1 (2.57) BS16 II0 N/A N/A N/A N/A
    892858 8xlp:1 (2.57) BS17 II0 N/A N/A N/A N/A
    892859 8xlp:1 (2.57) BS18 II0 N/A N/A N/A N/A
    892860 8xlp:1 (2.57) BS19 II0 N/A N/A N/A N/A
    892861 8xlp:1 (2.57) BS20 IHT N/A N/A N/A N/A
    892862 8xlp:2 (2.57) BS01 CLA N/A N/A N/A N/A
    892863 8xlp:2 (2.57) BS02 CLA N/A N/A N/A N/A
    892864 8xlp:2 (2.57) BS03 CLA N/A N/A N/A N/A
    892865 8xlp:2 (2.57) BS04 CLA N/A N/A N/A N/A
    892866 8xlp:2 (2.57) BS05 CLA N/A N/A N/A N/A
    892867 8xlp:2 (2.57) BS06 CLA N/A N/A N/A N/A
    892868 8xlp:2 (2.57) BS07 CLA N/A N/A N/A N/A
    892869 8xlp:2 (2.57) BS08 CLA N/A N/A N/A N/A
    892870 8xlp:2 (2.57) BS09 CLA N/A N/A N/A N/A
    892871 8xlp:2 (2.57) BS10 KC2 N/A N/A N/A N/A
    892872 8xlp:2 (2.57) BS11 CLA N/A N/A N/A N/A
    892873 8xlp:2 (2.57) BS12 CLA N/A N/A N/A N/A
    892874 8xlp:2 (2.57) BS13 II0 N/A N/A N/A N/A
    892875 8xlp:2 (2.57) BS14 II0 N/A N/A N/A N/A
    892876 8xlp:2 (2.57) BS15 II0 N/A N/A N/A N/A
    892877 8xlp:2 (2.57) BS16 II0 N/A N/A N/A N/A
    892878 8xlp:2 (2.57) BS17 IHT N/A N/A N/A N/A
    892879 8xlp:2 (2.57) BS18 II0 N/A N/A N/A N/A
    892880 8xlp:3 (2.57) BS01 CLA N/A N/A N/A N/A
    892881 8xlp:3 (2.57) BS02 CLA N/A N/A N/A N/A
    892882 8xlp:3 (2.57) BS03 CLA N/A N/A N/A N/A
    892883 8xlp:3 (2.57) BS04 CLA N/A N/A N/A N/A
    892884 8xlp:3 (2.57) BS05 KC2 N/A N/A N/A N/A
    892885 8xlp:3 (2.57) BS06 CLA N/A N/A N/A N/A
    892886 8xlp:3 (2.57) BS07 CLA N/A N/A N/A N/A
    892887 8xlp:3 (2.57) BS08 CLA N/A N/A N/A N/A
    892888 8xlp:3 (2.57) BS09 CLA N/A N/A N/A N/A
    892889 8xlp:3 (2.57) BS10 CLA N/A N/A N/A N/A
    892890 8xlp:3 (2.57) BS11 CLA N/A N/A N/A N/A
    892891 8xlp:3 (2.57) BS12 II0 N/A N/A N/A N/A
    892892 8xlp:3 (2.57) BS13 II0 N/A N/A N/A N/A
    892893 8xlp:3 (2.57) BS14 II0 N/A N/A N/A N/A
    892894 8xlp:3 (2.57) BS15 II0 N/A N/A N/A N/A
    892895 8xlp:3 (2.57) BS16 WVN N/A N/A N/A N/A
    892896 8xlp:4 (2.57) BS01 CLA N/A N/A N/A N/A
    892897 8xlp:4 (2.57) BS02 CLA N/A N/A N/A N/A
    892898 8xlp:4 (2.57) BS03 CLA N/A N/A N/A N/A
    892899 8xlp:4 (2.57) BS04 KC2 N/A N/A N/A N/A
    892900 8xlp:4 (2.57) BS05 CLA N/A N/A N/A N/A
    892901 8xlp:4 (2.57) BS06 CLA N/A N/A N/A N/A
    892902 8xlp:4 (2.57) BS07 CLA N/A N/A N/A N/A
    892903 8xlp:4 (2.57) BS08 CLA N/A N/A N/A N/A
    892904 8xlp:4 (2.57) BS09 KC2 N/A N/A N/A N/A
    892905 8xlp:4 (2.57) BS10 CLA N/A N/A N/A N/A
    892906 8xlp:4 (2.57) BS11 CLA N/A N/A N/A N/A
    892907 8xlp:4 (2.57) BS12 II0 N/A N/A N/A N/A
    892908 8xlp:4 (2.57) BS13 II0 N/A N/A N/A N/A
    892909 8xlp:4 (2.57) BS14 II0 N/A N/A N/A N/A
    892910 8xlp:4 (2.57) BS15 II0 N/A N/A N/A N/A
    892911 8xlp:4 (2.57) BS16 IHT N/A N/A N/A N/A
    892912 8xlp:4 (2.57) BS17 II0 N/A N/A N/A N/A
    892913 8xlp:5 (2.57) BS01 CLA N/A N/A N/A N/A
    892914 8xlp:5 (2.57) BS02 CLA N/A N/A N/A N/A
    892915 8xlp:5 (2.57) BS03 II0 N/A N/A N/A N/A
    892916 8xlp:5 (2.57) BS04 CLA N/A N/A N/A N/A
    892917 8xlp:5 (2.57) BS05 CLA N/A N/A N/A N/A
    892918 8xlp:5 (2.57) BS06 CLA N/A N/A N/A N/A
    892919 8xlp:5 (2.57) BS07 CLA N/A N/A N/A N/A
    892920 8xlp:5 (2.57) BS08 CLA N/A N/A N/A N/A
    892921 8xlp:5 (2.57) BS09 CLA N/A N/A N/A N/A
    892922 8xlp:5 (2.57) BS10 CLA N/A N/A N/A N/A
    892923 8xlp:5 (2.57) BS11 CLA N/A N/A N/A N/A
    892924 8xlp:5 (2.57) BS12 CLA N/A N/A N/A N/A
    892925 8xlp:5 (2.57) BS13 KC2 N/A N/A N/A N/A
    892926 8xlp:5 (2.57) BS14 CLA N/A N/A N/A N/A
    892927 8xlp:5 (2.57) BS15 CLA N/A N/A N/A N/A
    892928 8xlp:5 (2.57) BS16 II0 N/A N/A N/A N/A
    892929 8xlp:5 (2.57) BS17 II0 N/A N/A N/A N/A
    892930 8xlp:5 (2.57) BS18 II0 N/A N/A N/A N/A
    892931 8xlp:5 (2.57) BS19 II0 N/A N/A N/A N/A
    892932 8xlp:5 (2.57) BS20 IHT N/A N/A N/A N/A
    892933 8xlp:5 (2.57) BS21 CLA N/A N/A N/A N/A
    892934 8xlp:5 (2.57) BS22 II0 N/A N/A N/A N/A
    892935 8xlp:5 (2.57) BS23 WVN N/A N/A N/A N/A
    892936 8xlp:6 (2.57) BS01 CLA N/A N/A N/A N/A
    892937 8xlp:6 (2.57) BS02 CLA N/A N/A N/A N/A
    892938 8xlp:6 (2.57) BS03 CLA N/A N/A N/A N/A
    892939 8xlp:6 (2.57) BS04 CLA N/A N/A N/A N/A
    892940 8xlp:6 (2.57) BS05 KC2 N/A N/A N/A N/A
    892941 8xlp:6 (2.57) BS06 CLA N/A N/A N/A N/A
    892942 8xlp:6 (2.57) BS07 CLA N/A N/A N/A N/A
    892943 8xlp:6 (2.57) BS08 CLA N/A N/A N/A N/A
    892944 8xlp:6 (2.57) BS09 KC2 N/A N/A N/A N/A
    892945 8xlp:6 (2.57) BS10 CLA N/A N/A N/A N/A
    892946 8xlp:6 (2.57) BS11 CLA N/A N/A N/A N/A
    892947 8xlp:6 (2.57) BS12 II0 N/A N/A N/A N/A
    892948 8xlp:6 (2.57) BS13 II0 N/A N/A N/A N/A
    892949 8xlp:6 (2.57) BS14 II0 N/A N/A N/A N/A
    892950 8xlp:6 (2.57) BS15 II0 N/A N/A N/A N/A
    892951 8xlp:6 (2.57) BS16 WVN N/A N/A N/A N/A
    892952 8xlp:A (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    892953 8xlp:A (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    892954 8xlp:A (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    892955 8xlp:A (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    892956 8xlp:A (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    892957 8xlp:A (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    892958 8xlp:A (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    892959 8xlp:A (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    892960 8xlp:A (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    892961 8xlp:A (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    892962 8xlp:A (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    892963 8xlp:A (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    892964 8xlp:A (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    892965 8xlp:B (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    892966 8xlp:B (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    892967 8xlp:B (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    892968 8xlp:B (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    892969 8xlp:B (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    892970 8xlp:B (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    892971 8xlp:B (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    892972 8xlp:B (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    892973 8xlp:B (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    892974 8xlp:B (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    892975 8xlp:B (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    892976 8xlp:B (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    892977 8xlp:B (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    892978 8xlp:B (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    892979 8xlp:B (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    892980 8xlp:B (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    892981 8xlp:B (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    892982 8xlp:B (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    892983 8xlp:B (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    892984 8xlp:C (2.57) BS01 CLA N/A N/A A6MVR2 N/A
    892985 8xlp:C (2.57) BS02 CLA N/A N/A A6MVR2 N/A
    892986 8xlp:C (2.57) BS03 CLA N/A N/A A6MVR2 N/A
    892987 8xlp:C (2.57) BS04 CLA N/A N/A A6MVR2 N/A
    892988 8xlp:C (2.57) BS05 CLA N/A N/A A6MVR2 N/A
    892989 8xlp:C (2.57) BS06 CLA N/A N/A A6MVR2 N/A
    892990 8xlp:C (2.57) BS07 CLA N/A N/A A6MVR2 N/A
    892991 8xlp:C (2.57) BS08 CLA N/A N/A A6MVR2 N/A
    892992 8xlp:C (2.57) BS09 CLA N/A N/A A6MVR2 N/A
    892993 8xlp:C (2.57) BS10 CLA N/A N/A A6MVR2 N/A
    892994 8xlp:C (2.57) BS11 CLA N/A N/A A6MVR2 N/A
    892995 8xlp:C (2.57) BS12 CLA N/A N/A A6MVR2 N/A
    892996 8xlp:C (2.57) BS13 CLA N/A N/A A6MVR2 N/A
    892997 8xlp:C (2.57) BS14 WVN N/A N/A A6MVR2 N/A
    892998 8xlp:C (2.57) BS15 WVN N/A N/A A6MVR2 N/A
    892999 8xlp:C (2.57) BS16 WVN N/A N/A A6MVR2 N/A
    893000 8xlp:D (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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