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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887801 8wiw:f (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887802 8wix:A (2.29) BS01 HEM N/A N/A P01999 39090102
    887803 8wix:B (2.29) BS01 HEM N/A N/A P02130 39090102
    887804 8wiy:A (2.31) BS01 HEM N/A N/A P01999 39090102
    887805 8wiy:A (2.31) BS02 OXY N/A N/A P01999 39090102
    887806 8wiy:B (2.31) BS01 HEM N/A N/A P02130 39090102
    887807 8wiy:B (2.31) BS02 OXY N/A N/A P02130 39090102
    887808 8wiz:A (2.2) BS01 HEM N/A N/A P01999 39090102
    887809 8wiz:B (2.2) BS01 HEM N/A N/A P02130 39090102
    887810 8wiz:B (2.2) BS02 BCT N/A N/A P02130 39090102
    887811 8wj0:A (2.24) BS01 HEM N/A N/A P69905 39090102
    887812 8wj0:B (2.24) BS01 HEM N/A N/A P68871 39090102
    887813 8wj1:A (2.27) BS01 HEM N/A N/A P69905 39090102
    887814 8wj1:A (2.27) BS02 OXY N/A N/A P69905 39090102
    887815 8wj1:B (2.27) BS01 HEM N/A N/A P68871 39090102
    887816 8wj1:B (2.27) BS02 OXY N/A N/A P68871 39090102
    887817 8wj2:A (2.35) BS01 HEM N/A N/A P69905 39090102
    887818 8wj2:B (2.35) BS01 HEM N/A N/A P68871 39090102
    887819 8wj3:L (3.36) BS01 AGS N/A N/A N/A N/A
    887820 8wj3:M (3.36) BS01 AGS N/A N/A N/A N/A
    887821 8wj3:M (3.36) BS02 MG N/A N/A N/A N/A
    887822 8wj3:O (3.36) BS01 AGS N/A N/A N/A N/A
    887823 8wj3:O (3.36) BS02 MG N/A N/A N/A N/A
    887824 8wjc:A (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    887825 8wjc:B (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    887826 8wjc:C (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    887827 8wjc:D (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    887828 8wjd:A (1.71) BS01 C2E N/A N/A N/A N/A
    887829 8wjy:A (1.88) BS01 W9X 2.7.11.1 GO:0004672 ... Q99640 38146659
    887830 8wk0:D (3.34) BS01 AGS N/A N/A N/A N/A
    887831 8wk0:L (3.34) BS01 AGS N/A N/A N/A N/A
    887832 8wk0:M (3.34) BS01 AGS N/A N/A N/A N/A
    887833 8wk0:N (3.34) BS01 AGS N/A N/A N/A N/A
    887834 8wk0:O (3.34) BS01 AGS N/A N/A N/A N/A
    887835 8wk0:O (3.34) BS02 MG N/A N/A N/A N/A
    887836 8wk3:P (3.3) BS01 peptide N/A N/A P26462 N/A
    887837 8wk3:Q (3.3) BS01 peptide N/A N/A P16437 N/A
    887838 8wk3:Q (3.3) BS02 peptide N/A N/A P16437 N/A
    887839 8wk3:R (3.3) BS01 peptide N/A N/A P16437 N/A
    887840 8wk3:R (3.3) BS02 peptide N/A N/A P16437 N/A
    887841 8wk3:S (3.3) BS01 peptide N/A N/A P16437 N/A
    887842 8wk3:S (3.3) BS02 peptide N/A N/A P16437 N/A
    887843 8wk3:T (3.3) BS01 peptide N/A N/A P16437 N/A
    887844 8wk3:T (3.3) BS02 peptide N/A N/A P16437 N/A
    887845 8wk3:U (3.3) BS01 peptide N/A N/A P16437 N/A
    887846 8wk3:U (3.3) BS02 peptide N/A N/A P16437 N/A
    887847 8wk3:V (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887848 8wk3:V (3.3) BS02 peptide N/A N/A P0A1I7 N/A
    887849 8wk3:W (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887850 8wk3:X (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887851 8wk3:Y (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887852 8wk3:Z (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887853 8wk3:a (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887854 8wk3:a (3.3) BS02 peptide N/A N/A P0A1I7 N/A
    887855 8wk3:m (3.3) BS01 peptide N/A N/A P16323 N/A
    887856 8wk3:m (3.3) BS02 peptide N/A N/A P16323 N/A
    887857 8wk3:n (3.3) BS01 peptide N/A N/A P16323 N/A
    887858 8wk3:n (3.3) BS02 peptide N/A N/A P16323 N/A
    887859 8wk3:o (3.3) BS01 peptide N/A N/A P16323 N/A
    887860 8wk3:o (3.3) BS02 peptide N/A N/A P16323 N/A
    887861 8wk3:p (3.3) BS01 peptide N/A N/A P16323 N/A
    887862 8wk3:p (3.3) BS02 peptide N/A N/A P16323 N/A
    887863 8wk3:q (3.3) BS01 peptide N/A N/A P16323 N/A
    887864 8wk3:q (3.3) BS02 peptide N/A N/A P16323 N/A
    887865 8wk4:A (3.7) BS01 peptide N/A N/A P15928 N/A
    887866 8wk4:A (3.7) BS02 peptide N/A N/A P15928 N/A
    887867 8wk4:B (3.7) BS01 peptide N/A N/A P15928 N/A
    887868 8wk4:F (3.7) BS01 peptide N/A N/A P15928 N/A
    887869 8wk4:G (3.7) BS01 peptide N/A N/A P15928 N/A
    887870 8wk4:G (3.7) BS02 peptide N/A N/A P15928 N/A
    887871 8wk4:H (3.7) BS01 peptide N/A N/A P15928 N/A
    887872 8wk4:H (3.7) BS02 peptide N/A N/A P15928 N/A
    887873 8wk4:I (3.7) BS01 peptide N/A N/A P15928 N/A
    887874 8wk4:L (3.7) BS01 peptide N/A N/A P15928 N/A
    887875 8wk4:M (3.7) BS01 peptide N/A N/A P15928 N/A
    887876 8wk4:M (3.7) BS02 peptide N/A N/A P15928 N/A
    887877 8wk4:N (3.7) BS01 peptide N/A N/A P15928 N/A
    887878 8wk4:N (3.7) BS02 peptide N/A N/A P15928 N/A
    887879 8wk4:O (3.7) BS01 peptide N/A N/A P15928 N/A
    887880 8wk4:Q (3.7) BS01 peptide N/A N/A P15928 N/A
    887881 8wk4:R (3.7) BS01 peptide N/A N/A P15928 N/A
    887882 8wk4:S (3.7) BS01 peptide N/A N/A P15928 N/A
    887883 8wk4:T (3.7) BS01 peptide N/A N/A P15928 N/A
    887884 8wk4:T (3.7) BS02 peptide N/A N/A P15928 N/A
    887885 8wk4:U (3.7) BS01 peptide N/A N/A P15928 N/A
    887886 8wk4:V (3.7) BS01 peptide N/A N/A P15928 N/A
    887887 8wk4:W (3.7) BS01 peptide N/A N/A P15928 N/A
    887888 8wk4:X (3.7) BS01 peptide N/A N/A P15928 N/A
    887889 8wk4:Y (3.7) BS01 peptide N/A N/A P15928 N/A
    887890 8wk4:Z (3.7) BS01 peptide N/A N/A P15928 N/A
    887891 8wk4:Z (3.7) BS02 peptide N/A N/A P15928 N/A
    887892 8wk4:a (3.7) BS01 peptide N/A N/A P15928 N/A
    887893 8wk4:b (3.7) BS01 peptide N/A N/A P15928 N/A
    887894 8wk4:b (3.7) BS02 peptide N/A N/A P15928 N/A
    887895 8wk4:c (3.7) BS01 peptide N/A N/A P15928 N/A
    887896 8wk4:d (3.7) BS01 peptide N/A N/A P15928 N/A
    887897 8wk4:g (3.7) BS01 peptide N/A N/A P15928 N/A
    887898 8wk4:h (3.7) BS01 peptide N/A N/A P15928 N/A
    887899 8wkj:A (1.7) BS01 PLP 2.6.1.- GO:0003824 ... A0A130QXX8 37984176
    887900 8wkk:P (3.3) BS01 peptide N/A N/A P26462 N/A
    887901 8wkk:Q (3.3) BS01 peptide N/A N/A P16437 N/A
    887902 8wkk:Q (3.3) BS02 peptide N/A N/A P16437 N/A
    887903 8wkk:R (3.3) BS01 peptide N/A N/A P16437 N/A
    887904 8wkk:R (3.3) BS02 peptide N/A N/A P16437 N/A
    887905 8wkk:S (3.3) BS01 peptide N/A N/A P16437 N/A
    887906 8wkk:S (3.3) BS02 peptide N/A N/A P16437 N/A
    887907 8wkk:T (3.3) BS01 peptide N/A N/A P16437 N/A
    887908 8wkk:T (3.3) BS02 peptide N/A N/A P16437 N/A
    887909 8wkk:U (3.3) BS01 peptide N/A N/A P16437 N/A
    887910 8wkk:U (3.3) BS02 peptide N/A N/A P16437 N/A
    887911 8wkk:V (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887912 8wkk:V (3.3) BS02 peptide N/A N/A P0A1I7 N/A
    887913 8wkk:W (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887914 8wkk:X (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887915 8wkk:Y (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887916 8wkk:Z (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887917 8wkk:a (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    887918 8wkk:a (3.3) BS02 peptide N/A N/A P0A1I7 N/A
    887919 8wkk:m (3.3) BS01 peptide N/A N/A P16323 N/A
    887920 8wkk:m (3.3) BS02 peptide N/A N/A P16323 N/A
    887921 8wkk:n (3.3) BS01 peptide N/A N/A P16323 N/A
    887922 8wkk:n (3.3) BS02 peptide N/A N/A P16323 N/A
    887923 8wkk:o (3.3) BS01 peptide N/A N/A P16323 N/A
    887924 8wkk:o (3.3) BS02 peptide N/A N/A P16323 N/A
    887925 8wkk:p (3.3) BS01 peptide N/A N/A P16323 N/A
    887926 8wkk:p (3.3) BS02 peptide N/A N/A P16323 N/A
    887927 8wkk:q (3.3) BS01 peptide N/A N/A P16323 N/A
    887928 8wkk:q (3.3) BS02 peptide N/A N/A P16323 N/A
    887929 8wkk:u (3.3) BS01 peptide N/A N/A P0A1J3 N/A
    887930 8wkl:A (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887931 8wkl:B (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887932 8wkl:C (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887933 8wkl:D (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887934 8wkl:E (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887935 8wkl:F (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887936 8wkl:G (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887937 8wkl:H (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    887938 8wko:A (2.91) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    887939 8wko:A (2.91) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    887940 8wko:B (2.91) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    887941 8wko:B (2.91) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    887942 8wkp:AS2P (4.62) BS01 rna ? GO:0003735 ... P39478 38599770
    887943 8wkp:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 38599770
    887944 8wkp:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 38599770
    887945 8wkp:AS2P (4.62) BS04 UNK ? GO:0003735 ... P39478 38599770
    887946 8wkp:AS2P (4.62) BS05 UNK ? GO:0003735 ... P39478 38599770
    887947 8wkp:AS3P (4.62) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    887948 8wkp:AS4E (4.62) BS01 rna ? GO:0003723 ... O05634 38599770
    887949 8wkp:AS4P (4.62) BS01 rna ? GO:0003723 ... P39467 38599770
    887950 8wkp:AS5P (4.62) BS01 rna ? GO:0003723 ... O05641 38599770
    887951 8wkp:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 38599770
    887952 8wkp:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 38599770
    887953 8wkp:AS6E (4.62) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    887954 8wkp:AS7P (4.62) BS01 rna ? GO:0000028 ... P17198 38599770
    887955 8wkp:AS8E (4.62) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    887956 8wkp:AS8P (4.62) BS01 rna ? GO:0003735 ... O05636 38599770
    887957 8wkp:AS9P (4.62) BS01 rna ? GO:0000462 ... P39468 38599770
    887958 8wkp:S10P (4.62) BS01 rna ? GO:0000049 ... P17199 38599770
    887959 8wkp:S11P (4.62) BS01 rna ? GO:0003735 ... P39469 38599770
    887960 8wkp:S11P (4.62) BS02 rna ? GO:0003735 ... P39469 38599770
    887961 8wkp:S12P (4.62) BS01 rna ? GO:0003735 ... P11524 38599770
    887962 8wkp:S13P (4.62) BS01 rna ? GO:0003676 ... P39470 38599770
    887963 8wkp:S14P (4.62) BS01 rna ? GO:0003723 ... O05635 38599770
    887964 8wkp:S15P (4.62) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    887965 8wkp:S17E (4.62) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    887966 8wkp:S17P (4.62) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    887967 8wkp:S19E (4.62) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    887968 8wkp:S19P (4.62) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    887969 8wkp:S24E (4.62) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    887970 8wkp:S27A (4.62) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    887971 8wkp:S27E (4.62) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    887972 8wkp:S28E (4.62) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    887973 8wkp:S3AE (4.62) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    887974 8wkp:SL7A (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    887975 8wkq:4 (3.8) BS01 peptide N/A N/A P15928 N/A
    887976 8wkq:AM (3.8) BS01 peptide N/A N/A P15928 N/A
    887977 8wkq:P (3.8) BS01 peptide N/A N/A P26462 N/A
    887978 8wkq:Q (3.8) BS01 peptide N/A N/A P16437 N/A
    887979 8wkq:Q (3.8) BS02 peptide N/A N/A P16437 N/A
    887980 8wkq:R (3.8) BS01 peptide N/A N/A P16437 N/A
    887981 8wkq:R (3.8) BS02 peptide N/A N/A P16437 N/A
    887982 8wkq:S (3.8) BS01 peptide N/A N/A P16437 N/A
    887983 8wkq:S (3.8) BS02 peptide N/A N/A P16437 N/A
    887984 8wkq:T (3.8) BS01 peptide N/A N/A P16437 N/A
    887985 8wkq:T (3.8) BS02 peptide N/A N/A P16437 N/A
    887986 8wkq:U (3.8) BS01 peptide N/A N/A P16437 N/A
    887987 8wkq:U (3.8) BS02 peptide N/A N/A P16437 N/A
    887988 8wkq:V (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    887989 8wkq:V (3.8) BS02 peptide N/A N/A P0A1I7 N/A
    887990 8wkq:W (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    887991 8wkq:X (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    887992 8wkq:Y (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    887993 8wkq:Z (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    887994 8wkq:a (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    887995 8wkq:a (3.8) BS02 peptide N/A N/A P0A1I7 N/A
    887996 8wkr:A (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    887997 8wkr:A (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    887998 8wkr:B (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    887999 8wkr:B (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    888000 8wkr:C (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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