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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870801 8tfx:A (1.7) BS01 A2P 2.7.1.- GO:0000215 ... O57899 37883434
    870802 8tfy:A (1.54) BS01 NAP 2.7.1.- GO:0000215 ... O57899 37883434
    870803 8tfz:A (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    870804 8tfz:B (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    870805 8tg3:A (1.47) BS01 HQG 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    870806 8tg4:A (1.37) BS01 rna 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    870807 8tg4:A (1.37) BS02 9SO 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    870808 8tg5:A (2.0) BS01 9S2 2.7.1.- GO:0000215 ... O57899 37883434
    870809 8tg7:A (1.775) BS01 peptide ? N/A P03698 38663547
    870810 8tg7:A (1.775) BS02 peptide ? N/A P03698 38663547
    870811 8tg7:B (1.775) BS01 peptide ? N/A P03698 38663547
    870812 8tg7:B (1.775) BS02 peptide ? N/A P03698 38663547
    870813 8tg8:A (1.576) BS01 peptide ? N/A P03698 38663547
    870814 8tg9:A (3.08) BS01 peptide N/A N/A P16066 N/A
    870815 8tg9:B (3.08) BS01 peptide N/A N/A P16066 N/A
    870816 8tgb:A (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    870817 8tgb:B (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    870818 8tgc:A (1.484) BS01 peptide ? N/A P03698 38663547
    870819 8tgc:A (1.484) BS02 peptide ? N/A P03698 38663547
    870820 8tgc:B (1.484) BS01 peptide ? N/A P03698 38663547
    870821 8tgc:B (1.484) BS02 peptide ? N/A P03698 38663547
    870822 8tgd:A (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870823 8tgd:A (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870824 8tgd:C (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870825 8tgd:C (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870826 8tgf:A (1.6) BS01 peptide N/A GO:0000045 ... Q09490 N/A
    870827 8tgg:A (3.6) BS01 WRF ? GO:0005335 ... P54219 38499039
    870828 8tgg:B (3.6) BS01 YHR ? GO:0005335 ... P54219 38499039
    870829 8tgh:A (3.5) BS01 1WE ? GO:0005335 ... P54219 38499039
    870830 8tgh:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    870831 8tgi:A (3.4) BS01 LDP ? GO:0005335 ... P54219 38499039
    870832 8tgi:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    870833 8tgj:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    870834 8tgk:A (3.7) BS01 HSM ? GO:0005335 ... P54219 38499039
    870835 8tgk:B (3.7) BS01 YHR ? GO:0005335 ... P54219 38499039
    870836 8tgl:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    870837 8tgm:A (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    870838 8tgm:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    870839 8tgn:A (3.3) BS01 SRO ? GO:0005335 ... P54219 38499039
    870840 8tgn:B (3.3) BS01 YHR ? GO:0005335 ... P54219 38499039
    870841 8tgo:C (5.75) BS01 MAN N/A N/A N/A 38582771
    870842 8tgo:C (5.75) BS02 MAN N/A N/A N/A 38582771
    870843 8tgo:D (5.75) BS01 MAN N/A N/A N/A 38582771
    870844 8tgo:D (5.75) BS02 MAN N/A N/A N/A 38582771
    870845 8tgo:L (5.75) BS01 MAN N/A N/A N/A 38582771
    870846 8tgo:O (5.75) BS01 MAN N/A N/A N/A 38582771
    870847 8tgo:P (5.75) BS01 MAN N/A N/A N/A 38582771
    870848 8tgo:P (5.75) BS02 MAN N/A N/A N/A 38582771
    870849 8tgo:b (5.75) BS01 BMA N/A N/A N/A 38582771
    870850 8tgo:b (5.75) BS02 MAN N/A N/A N/A 38582771
    870851 8tgo:c (5.75) BS01 MAN N/A N/A N/A 38582771
    870852 8tgo:c (5.75) BS02 MAN N/A N/A N/A 38582771
    870853 8tgo:f (5.75) BS01 MAN N/A N/A N/A 38582771
    870854 8tgp:A (1.76) BS01 peptide 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 37966275
    870855 8tgp:A (1.76) BS02 ZN 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 37966275
    870856 8tgt:C (2.5) BS01 CA N/A N/A P04003 N/A
    870857 8tgw:A (3.6) BS01 BMA N/A N/A N/A 39187497
    870858 8tgy:A (2.18) BS01 9U1 ? GO:0005886 ... U2EQ00 37645731
    870859 8tgy:C (2.18) BS01 DMU N/A N/A N/A 37645731
    870860 8tgy:D (2.18) BS01 DMU N/A N/A N/A 37645731
    870861 8tgy:E (2.18) BS01 9U1 ? GO:0005886 ... U2EQ00 37645731
    870862 8th1:A (1.8) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870863 8th1:B (1.8) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870864 8th1:C (1.8) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870865 8th1:D (1.8) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870866 8th3:A (3.0) BS01 Y01 ? GO:0042597 ... P0ABE7
    P30556    		 38744986
    870867 8th3:A (3.0) BS02 Y01 ? GO:0042597 ... P0ABE7
    P30556    		 38744986
    870868 8th4:A (3.3) BS01 LSN ? GO:0042597 ... P0ABE7
    P30556    		 38744986
    870869 8th5:A (2.62) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870870 8th5:A (2.62) BS02 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870871 8th5:B (2.62) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870872 8th5:C (2.62) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870873 8th5:C (2.62) BS02 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870874 8th5:C (2.62) BS03 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870875 8th5:D (2.62) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870876 8th5:E (2.62) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870877 8th5:E (2.62) BS02 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870878 8th5:F (2.62) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870879 8th5:I (2.62) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870880 8th6:A (2.34) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870881 8th6:B (2.34) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870882 8th6:C (2.34) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870883 8th6:D (2.34) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870884 8th7:A (2.88) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870885 8th7:B (2.88) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    870886 8th9:A (2.08) BS01 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    870887 8th9:A (2.08) BS02 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    870888 8th9:A (2.08) BS03 ZN 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    870889 8thb:A (3.2) BS01 AGS ? GO:0000724 ... Q12050 38427736
    870890 8thb:B (3.2) BS01 AGS ? GO:0000077 ... P40339 38427736
    870891 8thb:B (3.2) BS02 AGS ? GO:0000077 ... P40339 38427736
    870892 8thb:C (3.2) BS01 AGS ? GO:0000077 ... P38629 38427736
    870893 8thb:C (3.2) BS02 MG ? GO:0000077 ... P38629 38427736
    870894 8thb:D (3.2) BS01 AGS ? GO:0000076 ... P40348 38427736
    870895 8thb:D (3.2) BS02 MG ? GO:0000076 ... P40348 38427736
    870896 8thb:E (3.2) BS01 ADP ? GO:0000077 ... P38251 38427736
    870897 8thc:A (3.67) BS01 AGS ? GO:0000724 ... Q12050 38427736
    870898 8thc:B (3.67) BS01 AGS ? GO:0000077 ... P40339 38427736
    870899 8thc:B (3.67) BS02 AGS ? GO:0000077 ... P40339 38427736
    870900 8thc:C (3.67) BS01 AGS ? GO:0000077 ... P38629 38427736
    870901 8thc:D (3.67) BS01 AGS ? GO:0000076 ... P40348 38427736
    870902 8thc:E (3.67) BS01 ADP ? GO:0000077 ... P38251 38427736
    870903 8thd:A (3.25) BS01 AGS ? GO:0000724 ... Q12050 38427736
    870904 8thd:B (3.25) BS01 AGS ? GO:0000077 ... P40339 38427736
    870905 8thd:B (3.25) BS02 AGS ? GO:0000077 ... P40339 38427736
    870906 8thd:B (3.25) BS03 MG ? GO:0000077 ... P40339 38427736
    870907 8thd:C (3.25) BS01 AGS ? GO:0000077 ... P38629 38427736
    870908 8thd:D (3.25) BS01 AGS ? GO:0000076 ... P40348 38427736
    870909 8thd:E (3.25) BS01 ADP ? GO:0000077 ... P38251 38427736
    870910 8the:A (2.5) BS01 HEM ? GO:0009279 ... Q9HV88 38325368
    870911 8the:A (2.5) BS02 CTQ ? GO:0009279 ... Q9HV88 38325368
    870912 8thg:A (2.9) BS01 657 ? GO:0001518 ... Q15858 37782796
    870913 8thg:A (2.9) BS02 Y01 ? GO:0001518 ... Q15858 37782796
    870914 8thg:A (2.9) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    870915 8thg:A (2.9) BS04 LPE ? GO:0001518 ... Q15858 37782796
    870916 8thg:A (2.9) BS05 LPE ? GO:0001518 ... Q15858 37782796
    870917 8thg:A (2.9) BS06 P5S ? GO:0001518 ... Q15858 37782796
    870918 8thg:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37782796
    870919 8thg:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37782796
    870920 8thh:A (2.7) BS01 IYJ ? GO:0001518 ... Q15858 37782796
    870921 8thh:A (2.7) BS02 IYJ ? GO:0001518 ... Q15858 37782796
    870922 8thh:A (2.7) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    870923 8thh:A (2.7) BS04 Y01 ? GO:0001518 ... Q15858 37782796
    870924 8thh:A (2.7) BS05 Y01 ? GO:0001518 ... Q15858 37782796
    870925 8thh:A (2.7) BS06 LPE ? GO:0001518 ... Q15858 37782796
    870926 8thh:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37782796
    870927 8thh:A (2.7) BS08 P5S ? GO:0001518 ... Q15858 37782796
    870928 8thh:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37782796
    870929 8thh:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37782796
    870930 8thh:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37782796
    870931 8thh:A (2.7) BS12 LPE ? GO:0001518 ... Q15858 37782796
    870932 8thh:A (2.7) BS13 Y01 ? GO:0001518 ... Q15858 37782796
    870933 8thk:R (2.6) BS01 CGZ 3.2.1.17 GO:0003796 ... P00720
    P35348    		 37563160
    870934 8thl:R (3.1) BS01 ALE 3.2.1.17 GO:0003796 ... P00720
    P35348    		 37563160
    870935 8thm:A (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    870936 8thm:A (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    870937 8thm:B (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    870938 8thm:B (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    870939 8thm:C (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    870940 8thm:C (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    870941 8thm:D (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    870942 8thm:D (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    870943 8thm:D (2.3) BS03 BCT 4.2.1.1 N/A B5ILN4 38728392
    870944 8thm:E (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    870945 8thm:E (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    870946 8thm:F (2.3) BS01 BCT 4.2.1.1 N/A B5ILN4 38728392
    870947 8thm:F (2.3) BS02 ZN 4.2.1.1 N/A B5ILN4 38728392
    870948 8thm:F (2.3) BS03 RUB 4.2.1.1 N/A B5ILN4 38728392
    870949 8thn:C (2.9) BS01 TBA ? GO:0005249 ... P0A334 38042487
    870950 8tho:A (-1.00) BS01 ZN N/A N/A Q9H165 N/A
    870951 8tho:A (-1.00) BS02 ZN N/A N/A Q9H165 N/A
    870952 8tho:A (-1.00) BS03 ZN N/A N/A Q9H165 N/A
    870953 8thp:A (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    870954 8thp:A (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    870955 8thp:B (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    870956 8thp:B (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    870957 8thr:A (3.12) BS01 EBZ ? GO:0001975 ... Q05940 38517752
    870958 8thu:A (3.1) BS01 dna ? GO:0000786 ... P84233 N/A
    870959 8thu:A (3.1) BS02 dna ? GO:0000786 ... P84233 N/A
    870960 8thu:B (3.1) BS01 dna ? GO:0000786 ... P62799 N/A
    870961 8thu:B (3.1) BS02 dna ? GO:0000786 ... P62799 N/A
    870962 8thu:C (3.1) BS01 dna ? GO:0000786 ... P0C0S5 N/A
    870963 8thu:C (3.1) BS02 dna ? GO:0000786 ... P0C0S5 N/A
    870964 8thu:D (3.1) BS01 dna ? GO:0000786 ... P02281 N/A
    870965 8thu:D (3.1) BS02 dna ? GO:0000786 ... P02281 N/A
    870966 8thu:E (3.1) BS01 dna ? GO:0000786 ... P84233 N/A
    870967 8thu:E (3.1) BS02 dna ? GO:0000786 ... P84233 N/A
    870968 8thu:F (3.1) BS01 dna ? GO:0000786 ... P62799 N/A
    870969 8thu:G (3.1) BS01 dna ? GO:0000786 ... P0C0S5 N/A
    870970 8thu:G (3.1) BS02 dna ? GO:0000786 ... P0C0S5 N/A
    870971 8thu:H (3.1) BS01 dna ? GO:0000786 ... P02281 N/A
    870972 8thu:H (3.1) BS02 dna ? GO:0000786 ... P02281 N/A
    870973 8thx:A (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870974 8thx:B (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870975 8thx:C (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870976 8thx:D (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870977 8thx:E (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870978 8thy:A (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870979 8thy:A (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    870980 8thy:B (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870981 8thy:B (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    870982 8thy:C (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870983 8thy:C (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    870984 8thy:D (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870985 8thy:D (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    870986 8thy:E (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    870987 8thy:E (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    870988 8ti0:A (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    870989 8ti0:B (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    870990 8ti0:C (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    870991 8ti0:D (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    870992 8ti0:E (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    870993 8ti0:F (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    870994 8ti0:G (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    870995 8ti1:A (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    870996 8ti1:A (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    870997 8ti1:B (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    870998 8ti1:B (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    870999 8ti1:C (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    871000 8ti1:C (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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