Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 405 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5xnm:N (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    202 5xnm:N (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    203 5xnm:N (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    204 5xnm:N (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    205 5xnm:N (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    206 5xnm:N (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    207 5xnm:N (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    208 5xnm:N (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    209 5xnm:N (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    210 5xnm:N (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    211 5xnm:N (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    212 5xnm:N (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    213 5xnm:N (3.2) BS15 CLA ? GO:0009765 ... P27490 28839073
    214 5xnm:N (3.2) BS16 CLA ? GO:0009765 ... P27490 28839073
    215 5xnm:N (3.2) BS17 CLA ? GO:0009765 ... P27490 28839073
    216 5xnm:R (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    217 5xnm:R (3.2) BS02 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    218 5xnm:R (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    219 5xnm:R (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    220 5xnm:R (3.2) BS05 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    221 5xnm:R (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    222 5xnm:R (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    223 5xnm:R (3.2) BS08 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    224 5xnm:R (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    225 5xnm:R (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    226 5xnm:R (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    227 5xnm:R (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    228 5xnm:R (3.2) BS13 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    229 5xnm:R (3.2) BS14 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    230 5xnm:S (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    231 5xnm:S (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    232 5xnm:S (3.2) BS03 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    233 5xnm:S (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    234 5xnm:S (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    235 5xnm:S (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    236 5xnm:S (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    237 5xnm:S (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    238 5xnm:S (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    239 5xnm:S (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    240 5xnm:S (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    241 5xnm:S (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    242 5xnm:S (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    243 5xnm:S (3.2) BS14 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    244 5xnm:Y (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    245 5xnm:Y (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    246 5xnm:Y (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    247 5xnm:Y (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    248 5xnm:Y (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    249 5xnm:Y (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    250 5xnm:Y (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    251 5xnm:Y (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    252 5xnm:Y (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    253 5xnm:Y (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    254 5xnm:Y (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    255 5xnm:Y (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    256 5xnm:Y (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    257 5xnm:Y (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    258 5xnm:Y (3.2) BS15 CLA ? GO:0009765 ... P27490 28839073
    259 5xnm:Y (3.2) BS16 CLA ? GO:0009765 ... P27490 28839073
    260 5xnm:Y (3.2) BS17 CLA ? GO:0009765 ... P27490 28839073
    261 5xnm:Z (3.2) BS01 CLA ? GO:0009507 ... Q32902 28839073
    262 5xnm:a (3.2) BS01 OEX 1.10.3.9 GO:0005506 ... P06585 28839073
    263 5xnm:a (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 28839073
    264 5xnm:a (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    265 5xnm:a (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    266 5xnm:a (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    267 5xnm:a (3.2) BS06 PHO 1.10.3.9 GO:0005506 ... P06585 28839073
    268 5xnm:a (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... P06585 28839073
    269 5xnm:a (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    270 5xnm:a (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    271 5xnm:a (3.2) BS10 BCT 1.10.3.9 GO:0005506 ... P06585 28839073
    272 5xnm:b (3.2) BS01 peptide ? GO:0009507 ... Q9XQR6 28839073
    273 5xnm:b (3.2) BS02 CLA ? GO:0009507 ... Q9XQR6 28839073
    274 5xnm:b (3.2) BS03 CLA ? GO:0009507 ... Q9XQR6 28839073
    275 5xnm:b (3.2) BS04 CLA ? GO:0009507 ... Q9XQR6 28839073
    276 5xnm:b (3.2) BS05 CLA ? GO:0009507 ... Q9XQR6 28839073
    277 5xnm:b (3.2) BS06 CLA ? GO:0009507 ... Q9XQR6 28839073
    278 5xnm:b (3.2) BS07 CLA ? GO:0009507 ... Q9XQR6 28839073
    279 5xnm:b (3.2) BS08 CLA ? GO:0009507 ... Q9XQR6 28839073
    280 5xnm:b (3.2) BS09 CLA ? GO:0009507 ... Q9XQR6 28839073
    281 5xnm:b (3.2) BS10 CLA ? GO:0009507 ... Q9XQR6 28839073
    282 5xnm:b (3.2) BS11 CLA ? GO:0009507 ... Q9XQR6 28839073
    283 5xnm:b (3.2) BS12 CLA ? GO:0009507 ... Q9XQR6 28839073
    284 5xnm:b (3.2) BS13 CLA ? GO:0009507 ... Q9XQR6 28839073
    285 5xnm:b (3.2) BS14 CLA ? GO:0009507 ... Q9XQR6 28839073
    286 5xnm:b (3.2) BS15 CLA ? GO:0009507 ... Q9XQR6 28839073
    287 5xnm:b (3.2) BS16 CLA ? GO:0009507 ... Q9XQR6 28839073
    288 5xnm:b (3.2) BS17 CLA ? GO:0009507 ... Q9XQR6 28839073
    289 5xnm:b (3.2) BS18 CLA ? GO:0009507 ... Q9XQR6 28839073
    290 5xnm:b (3.2) BS19 CHL ? GO:0009507 ... Q9XQR6 28839073
    291 5xnm:b (3.2) BS20 CLA ? GO:0009507 ... Q9XQR6 28839073
    292 5xnm:c (3.2) BS01 OEX ? GO:0005737 ... P06004 28839073
    293 5xnm:c (3.2) BS02 CLA ? GO:0005737 ... P06004 28839073
    294 5xnm:c (3.2) BS03 CLA ? GO:0005737 ... P06004 28839073
    295 5xnm:c (3.2) BS04 CLA ? GO:0005737 ... P06004 28839073
    296 5xnm:c (3.2) BS05 CLA ? GO:0005737 ... P06004 28839073
    297 5xnm:c (3.2) BS06 CLA ? GO:0005737 ... P06004 28839073
    298 5xnm:c (3.2) BS07 CLA ? GO:0005737 ... P06004 28839073
    299 5xnm:c (3.2) BS08 CLA ? GO:0005737 ... P06004 28839073
    300 5xnm:c (3.2) BS09 CLA ? GO:0005737 ... P06004 28839073
    301 5xnm:c (3.2) BS10 CLA ? GO:0005737 ... P06004 28839073
    302 5xnm:c (3.2) BS11 CLA ? GO:0005737 ... P06004 28839073
    303 5xnm:c (3.2) BS12 CLA ? GO:0005737 ... P06004 28839073
    304 5xnm:c (3.2) BS13 CLA ? GO:0005737 ... P06004 28839073
    305 5xnm:c (3.2) BS14 CLA ? GO:0005737 ... P06004 28839073
    306 5xnm:d (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06006 28839073
    307 5xnm:d (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    308 5xnm:d (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    309 5xnm:d (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P06006 28839073
    310 5xnm:d (3.2) BS05 PHO 1.10.3.9 GO:0005506 ... P06006 28839073
    311 5xnm:d (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    312 5xnm:d (3.2) BS07 BCT 1.10.3.9 GO:0005506 ... P06006 28839073
    313 5xnm:d (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    314 5xnm:d (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    315 5xnm:e (3.2) BS01 peptide ? GO:0005506 ... P13554 28839073
    316 5xnm:e (3.2) BS02 HEM ? GO:0005506 ... P13554 28839073
    317 5xnm:f (3.2) BS01 HEM ? GO:0005506 ... P62096 28839073
    318 5xnm:g (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    319 5xnm:g (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    320 5xnm:g (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    321 5xnm:g (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    322 5xnm:g (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    323 5xnm:g (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    324 5xnm:g (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    325 5xnm:g (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    326 5xnm:g (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    327 5xnm:g (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    328 5xnm:g (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    329 5xnm:g (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    330 5xnm:g (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    331 5xnm:g (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    332 5xnm:g (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    333 5xnm:g (3.2) BS16 CHL ? GO:0009765 ... P27490 28839073
    334 5xnm:h (3.2) BS01 CLA ? GO:0009507 ... Q9XQR3 28839073
    335 5xnm:h (3.2) BS02 CLA ? GO:0009507 ... Q9XQR3 28839073
    336 5xnm:i (3.2) BS01 CLA ? GO:0005737 ... D5MAJ9 28839073
    337 5xnm:i (3.2) BS02 CLA ? GO:0005737 ... D5MAJ9 28839073
    338 5xnm:k (3.2) BS01 CLA ? GO:0005737 ... D5MAJ8 28839073
    339 5xnm:k (3.2) BS02 CLA ? GO:0005737 ... D5MAJ8 28839073
    340 5xnm:l (3.2) BS01 CLA ? GO:0005737 ... P60147 28839073
    341 5xnm:m (3.2) BS01 CLA ? GO:0005737 ... P69529 28839073
    342 5xnm:n (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    343 5xnm:n (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    344 5xnm:n (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    345 5xnm:n (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    346 5xnm:n (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    347 5xnm:n (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    348 5xnm:n (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    349 5xnm:n (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    350 5xnm:n (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    351 5xnm:n (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    352 5xnm:n (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    353 5xnm:n (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    354 5xnm:n (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    355 5xnm:n (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    356 5xnm:n (3.2) BS15 CLA ? GO:0009765 ... P27490 28839073
    357 5xnm:n (3.2) BS16 CLA ? GO:0009765 ... P27490 28839073
    358 5xnm:n (3.2) BS17 CLA ? GO:0009765 ... P27490 28839073
    359 5xnm:r (3.2) BS01 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    360 5xnm:r (3.2) BS02 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    361 5xnm:r (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    362 5xnm:r (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    363 5xnm:r (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    364 5xnm:r (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    365 5xnm:r (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    366 5xnm:r (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    367 5xnm:r (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    368 5xnm:r (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    369 5xnm:r (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    370 5xnm:r (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    371 5xnm:r (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    372 5xnm:r (3.2) BS14 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    373 5xnm:r (3.2) BS15 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    374 5xnm:s (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    375 5xnm:s (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    376 5xnm:s (3.2) BS03 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    377 5xnm:s (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    378 5xnm:s (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    379 5xnm:s (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    380 5xnm:s (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    381 5xnm:s (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    382 5xnm:s (3.2) BS09 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    383 5xnm:s (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    384 5xnm:s (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    385 5xnm:s (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    386 5xnm:s (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    387 5xnm:s (3.2) BS14 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    388 5xnm:y (3.2) BS01 CLA ? GO:0009765 ... P27490 28839073
    389 5xnm:y (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    390 5xnm:y (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    391 5xnm:y (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    392 5xnm:y (3.2) BS05 CLA ? GO:0009765 ... P27490 28839073
    393 5xnm:y (3.2) BS06 CLA ? GO:0009765 ... P27490 28839073
    394 5xnm:y (3.2) BS07 CLA ? GO:0009765 ... P27490 28839073
    395 5xnm:y (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    396 5xnm:y (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    397 5xnm:y (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    398 5xnm:y (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    399 5xnm:y (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    400 5xnm:y (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417