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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 1b08:B (2.3) BS02 CA ? N/A P35247 10368295
    2402 1b08:B (2.3) BS03 CA ? N/A P35247 10368295
    2403 1b08:C (2.3) BS01 CA ? N/A P35247 10368295
    2404 1b08:C (2.3) BS02 CA ? N/A P35247 10368295
    2405 1b08:C (2.3) BS03 CA ? N/A P35247 10368295
    2406 1b09:A (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2407 1b09:A (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2408 1b09:A (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2409 1b09:B (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2410 1b09:B (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2411 1b09:B (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2412 1b09:C (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2413 1b09:C (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2414 1b09:C (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2415 1b09:D (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2416 1b09:D (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2417 1b09:D (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2418 1b09:E (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2419 1b09:E (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2420 1b09:E (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2421 1b0b:A (1.43) BS01 CYN ? GO:0005576 ... P41260 10423453
    2422 1b0b:A (1.43) BS02 HEM ? GO:0005576 ... P41260 10423453
    2423 1b0d:A (1.84) BS01 TSU 3.2.1.17 GO:0003796 ... P00698 11418760
    2424 1b0e:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9651152
    2425 1b0e:A (1.8) BS02 SEI 3.4.21.36 GO:0004252 ... P00772 9651152
    2426 1b0f:A (3.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 9651152
    2427 1b0f:A (3.0) BS02 SEI 3.4.21.37 GO:0000122 ... P08246 9651152 PDBbind: -logKd/Ki=7.70, Ki=20nM
    BindingDB: Ki=25nM
    2428 1b0g:A (2.5) BS01 peptide ? N/A P04439 9892618
    2429 1b0g:D (2.5) BS01 peptide ? N/A P04439 9892618
    2430 1b0h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    2431 1b0i:A (2.4) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9862804
    2432 1b0j:A (2.5) BS01 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    2433 1b0k:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    2434 1b0k:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    2435 1b0k:A (2.5) BS03 O 4.2.1.3 GO:0003994 ... P16276 10631981
    2436 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 10089347
    2437 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 10089347
    2438 1b0l:A (2.2) BS03 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    2439 1b0l:A (2.2) BS04 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    2440 1b0m:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    2441 1b0m:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    2442 1b0n:A (1.9) BS01 ZN ? GO:0003677 ... P06533 9799632
    2443 1b0n:A (1.9) BS02 ZN ? GO:0003677 ... P06533 9799632
    2444 1b0n:A (1.9) BS03 ZN ? GO:0003677 ... P06533 9799632
    2445 1b0n:B (1.9) BS01 ZN ? GO:0006355 ... P23308 9799632
    2446 1b0o:A (2.5) BS01 PLM ? GO:0005515 ... P02754 9867826
    2447 1b0p:A (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    2448 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    2449 1b0p:A (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2450 1b0p:A (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2451 1b0p:A (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2452 1b0p:A (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    2453 1b0p:B (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    2454 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    2455 1b0p:B (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2456 1b0p:B (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2457 1b0p:B (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2458 1b0p:B (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    2459 1b0r:A (2.9) BS01 peptide ? N/A P04439 9741848
    2460 1b0t:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 N/A
    2461 1b0t:A (2.1) BS02 F3S ? GO:0003677 ... P00214 N/A
    2462 1b0u:A (1.5) BS01 ATP 7.4.2.1 GO:0003333 ... P02915 9872322
    2463 1b0v:A (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2464 1b0v:A (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2465 1b0v:B (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2466 1b0v:B (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2467 1b0v:C (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2468 1b0v:C (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2469 1b0v:D (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2470 1b0v:D (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2471 1b0y:A (0.93) BS01 SF4 ? GO:0009055 ... P00260 10531472
    2472 1b11:A (1.9) BS01 3TL 2.7.7.-
    2.7.7.49
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.-
    3.6.1.23    		 GO:0004190 ... P16088 10651036 MOAD: Ki=41nM
    PDBbind: -logKd/Ki=7.39, Ki=41nM
    2473 1b12:A (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2474 1b12:B (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2475 1b12:C (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2476 1b12:D (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2477 1b13:A (1.5) BS01 FE ? GO:0005506 ... P00268 10216292
    2478 1b14:A (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    2479 1b14:B (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    2480 1b15:A (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    2481 1b15:B (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    2482 1b16:A (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    2483 1b16:B (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    2484 1b17:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2485 1b18:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2486 1b19:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2487 1b1b:A (2.6) BS01 ZN ? GO:0003677 ... P9WMH1 9887269
    2488 1b1b:A (2.6) BS02 ZN ? GO:0003677 ... P9WMH1 9887269
    2489 1b1c:A (1.93) BS01 FMN 1.6.2.4 GO:0010181 ... P16435 10048323
    2490 1b1g:A (-1.00) BS01 CA ? GO:0005499 ... P02633 9390401
    2491 1b1g:A (-1.00) BS02 CA ? GO:0005499 ... P02633 9390401
    2492 1b1h:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10422831
    2493 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001503 ... O77811 10366507
    2494 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001503 ... O77811 10366507
    2495 1b1x:A (2.62) BS03 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    2496 1b1x:A (2.62) BS04 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    2497 1b1y:A (2.5) BS01 BGC 3.2.1.2 GO:0000272 ... P16098 9918723
    2498 1b1y:A (2.5) BS02 GLC 3.2.1.2 GO:0000272 ... P16098 9918723
    2499 1b23:P (2.6) BS01 rna ? GO:0003746 ... Q01698 10368282
    2500 1b23:P (2.6) BS02 CYS ? GO:0003746 ... Q01698 10368282
    2501 1b23:P (2.6) BS03 MG ? GO:0003746 ... Q01698 10368282
    2502 1b23:P (2.6) BS04 GNP ? GO:0003746 ... Q01698 10368282
    2503 1b25:A (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2504 1b25:A (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2505 1b25:B (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2506 1b25:B (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2507 1b25:C (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2508 1b25:C (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2509 1b25:D (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2510 1b25:D (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2511 1b2a:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2512 1b2b:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2513 1b2c:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2514 1b2d:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2515 1b2e:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    2516 1b2f:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    2517 1b2g:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2518 1b2h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    2519 1b2i:A (-1.00) BS01 AMH 3.4.21.7 N/A P00747 10625440 PDBbind: -logKd/Ki=5.51, IC50=3.1uM
    BindingDB: Kd=1100nM, IC50=3100nM, Ki=25000000nM
    2520 1b2j:A (1.6) BS01 FE ? GO:0005506 ... P00268 10216292
    2521 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    2522 1b2l:A (1.6) BS02 NDC 1.1.1.1 GO:0004022 ... P10807 10366509
    2523 1b2l:A (1.6) BS03 CYH 1.1.1.1 GO:0004022 ... P10807 10366509
    2524 1b2m:A (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2525 1b2m:B (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2526 1b2m:B (2.0) BS02 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2527 1b2o:A (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    2528 1b2o:B (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    2529 1b2r:A (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 10651039
    2530 1b2v:A (1.9) BS01 HEM ? GO:0005515 ... Q54450 10360351
    2531 1b2y:A (3.2) BS01 BGC 3.2.1.1 GO:0003824 ... P04746 10657258
    2532 1b2y:A (3.2) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 10657258
    2533 1b2y:A (3.2) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10657258
    2534 1b2y:A (3.2) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 10657258
    2535 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    2536 1b2z:C (2.03) BS01 ZN 3.1.27.- GO:0003723 ... P00648 11914482
    2537 1b30:A (2.25) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2538 1b30:A (2.25) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2539 1b32:A (1.75) BS01 peptide ? GO:0015031 ... P06202 10438628
    2540 1b33:A (2.3) BS01 BLA ? GO:0009579 ... P00315 9990029
    2541 1b33:B (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    2542 1b33:F (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    2543 1b33:N (2.3) BS01 BLA ? GO:0009579 ... P20116 9990029
    2544 1b37:A (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    2545 1b37:B (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    2546 1b37:C (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    2547 1b38:A (2.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    2548 1b38:A (2.0) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.254uM
    PDBbind: -logKd/Ki=6.60, Kd=0.254uM
    2549 1b39:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    2550 1b39:A (2.1) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.12uM
    PDBbind: -logKd/Ki=6.92, Kd=0.120uM
    2551 1b3a:A (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    2552 1b3a:B (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    2553 1b3d:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2554 1b3d:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2555 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2556 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2557 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2558 1b3d:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2559 1b3d:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2560 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2561 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2562 1b3d:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2563 1b3d:B (2.3) BS06 S27 3.4.24.17 GO:0004222 ... P08254 10543949 BindingDB: IC50=24nM
    2564 1b3e:A (2.5) BS01 FE ? GO:0005576 ... P02787 10029548
    2565 1b3e:A (2.5) BS02 CO3 ? GO:0005576 ... P02787 10029548
    2566 1b3f:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10438628
    2567 1b3g:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    2568 1b3h:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10422831
    2569 1b3i:A (-1.00) BS01 CU1 1.10.99.1 GO:0005507 ... P50057 10213601
    2570 1b3l:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    2571 1b3l:C (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    2572 1b3n:A (2.65) BS01 CER 2.3.1.179 GO:0004315 ... P0AAI5 10037680
    2573 1b3o:A (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    2574 1b3o:A (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    2575 1b3o:B (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    2576 1b3o:B (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    2577 1b3r:A (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2578 1b3r:A (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2579 1b3r:B (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2580 1b3r:B (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2581 1b3r:C (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2582 1b3r:C (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2583 1b3r:D (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2584 1b3r:D (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2585 1b3t:A (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2586 1b3t:A (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2587 1b3t:B (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2588 1b3t:B (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2589 1b3v:A (2.4) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2590 1b3v:A (2.4) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2591 1b3v:A (2.4) BS03 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    2592 1b3v:A (2.4) BS04 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2593 1b3w:A (2.6) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2594 1b3w:A (2.6) BS02 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    2595 1b3w:A (2.6) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2596 1b3x:A (2.2) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2597 1b3x:A (2.2) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2598 1b3x:A (2.2) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2599 1b3y:A (2.45) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2600 1b3y:A (2.45) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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