Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6lqm:0 (3.09) BS01 rna ? GO:0003676 ... Q969S3 32669547
    2 6lqm:3 (3.09) BS01 rna ? GO:0000055 ... Q96D46 32669547
    3 6lqm:6 (3.09) BS01 rna ? GO:0000054 ... P56537 32669547
    4 6lqm:B (3.09) BS01 rna ? GO:0002181 ... P39023 32669547
    5 6lqm:C (3.09) BS01 rna ? GO:0002181 ... P47914 32669547
    6 6lqm:D (3.09) BS01 rna ? GO:0002181 ... P36578 32669547
    7 6lqm:D (3.09) BS02 rna ? GO:0002181 ... P36578 32669547
    8 6lqm:E (3.09) BS01 rna ? GO:0002181 ... P62888 32669547
    9 6lqm:F (3.09) BS01 rna ? GO:0002181 ... P49207 32669547
    10 6lqm:F (3.09) BS02 MG ? GO:0002181 ... P49207 32669547
    11 6lqm:G (3.09) BS01 rna ? GO:0000470 ... P62424 32669547
    12 6lqm:G (3.09) BS02 rna ? GO:0000470 ... P62424 32669547
    13 6lqm:H (3.09) BS01 rna ? GO:0000463 ... P42766 32669547
    14 6lqm:H (3.09) BS02 rna ? GO:0000463 ... P42766 32669547
    15 6lqm:I (3.09) BS01 rna ? GO:0002181 ... P32969 32669547
    16 6lqm:J (3.09) BS01 rna ? GO:0000027 ... Q96L21 32669547
    17 6lqm:J (3.09) BS02 rna ? GO:0000027 ... Q96L21 32669547
    18 6lqm:K (3.09) BS01 rna ? GO:0002181 ... Q9Y3U8 32669547
    19 6lqm:L (3.09) BS01 rna ? GO:0002181 ... P46776 32669547
    20 6lqm:M (3.09) BS01 rna ? GO:0002181 ... P61927 32669547
    21 6lqm:M (3.09) BS02 rna ? GO:0002181 ... P61927 32669547
    22 6lqm:N (3.09) BS01 rna ? GO:0000027 ... P62913 32669547
    23 6lqm:N (3.09) BS02 rna ? GO:0000027 ... P62913 32669547
    24 6lqm:O (3.09) BS01 rna ? GO:0001501 ... P63173 32669547
    25 6lqm:P (3.09) BS01 rna ? GO:0002181 ... P62891 32669547
    26 6lqm:P (3.09) BS02 rna ? GO:0002181 ... P62891 32669547
    27 6lqm:Q (3.09) BS01 rna ? GO:0001824 ... P26373 32669547
    28 6lqm:Q (3.09) BS02 rna ? GO:0001824 ... P26373 32669547
    29 6lqm:R (3.09) BS01 rna ? GO:0002181 ... P62987 32669547
    30 6lqm:S (3.09) BS01 rna ? GO:0002181 ... P50914 32669547
    31 6lqm:T (3.09) BS01 rna ? GO:0002181 ... P62899 32669547
    32 6lqm:U (3.09) BS01 rna ? GO:0002181 ... P61313 32669547
    33 6lqm:U (3.09) BS02 rna ? GO:0002181 ... P61313 32669547
    34 6lqm:V (3.09) BS01 rna ? GO:0002181 ... P40429 32669547
    35 6lqm:W (3.09) BS01 rna ? GO:0002181 ... P83881 32669547
    36 6lqm:X (3.09) BS01 rna ? GO:0002181 ... P61513 32669547
    37 6lqm:Y (3.09) BS01 rna ? GO:0002181 ... P18621 32669547
    38 6lqm:Y (3.09) BS02 rna ? GO:0002181 ... P18621 32669547
    39 6lqm:Z (3.09) BS01 rna ? GO:0002181 ... Q07020 32669547
    40 6lqm:a (3.09) BS01 rna ? GO:0002181 ... P84098 32669547
    41 6lqm:b (3.09) BS01 rna ? GO:0002181 ... Q02543 32669547
    42 6lqm:b (3.09) BS02 rna ? GO:0002181 ... Q02543 32669547
    43 6lqm:c (3.09) BS01 rna ? GO:0002181 ... P46778 32669547
    44 6lqm:c (3.09) BS02 rna ? GO:0002181 ... P46778 32669547
    45 6lqm:d (3.09) BS01 rna ? GO:0002181 ... P35268 32669547
    46 6lqm:e (3.09) BS01 rna ? GO:0000122 ... P62829 32669547
    47 6lqm:f (3.09) BS01 rna ? GO:0000027 ... P83731 32669547
    48 6lqm:g (3.09) BS01 rna ? GO:0000027 ... P62750 32669547
    49 6lqm:g (3.09) BS02 rna ? GO:0000027 ... P62750 32669547
    50 6lqm:h (3.09) BS01 rna ? GO:0002181 ... P61254 32669547
    51 6lqm:h (3.09) BS02 rna ? GO:0002181 ... P61254 32669547
    52 6lqm:i (3.09) BS01 rna ? GO:0002181 ... P61353 32669547
    53 6lqm:l (3.09) BS01 rna ? GO:0002181 ... P46779 32669547
    54 6lqm:m (3.09) BS01 rna ? GO:0002181 ... P62917 32669547
    55 6lqm:m (3.09) BS02 MG ? GO:0002181 ... P62917 32669547
    56 6lqm:r (3.09) BS01 rna ? GO:0000027 ... P46777 32669547
    57 6lqm:r (3.09) BS02 rna ? GO:0000027 ... P46777 32669547
    58 6lqm:t (3.09) BS01 rna ? GO:0002181 ... P62910 32669547
    59 6lqm:t (3.09) BS02 MG ? GO:0002181 ... P62910 32669547
    60 6lqm:u (3.09) BS01 rna ? GO:0000049 ... P18077 32669547
    61 6lqm:v (3.09) BS01 rna ? GO:0000027 ... Q02878 32669547
    62 6lqm:w (3.09) BS01 rna ? GO:0000463 ... P18124 32669547
    63 6lqm:w (3.09) BS02 rna ? GO:0000463 ... P18124 32669547
    64 6lqm:w (3.09) BS03 MG ? GO:0000463 ... P18124 32669547
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417