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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    447401 8u8u:E (2.9) BS03 APC N/A N/A O00411 39164235
    447402 8u8v:E (2.74) BS03 APC N/A N/A O00411 39164235
    447403 8u8w:A (1.8) BS01 PYR 4.1.3.3 GO:0005737 ... A0A0H3FJT8 N/A
    447404 8u8x:A (1.69) BS01 W9N 2.7.10.1 N/A P04626 38820338
    447405 8u8y:A (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447406 8u8y:A (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447407 8u8y:B (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447408 8u8y:B (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447409 8u8y:C (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447410 8u8y:C (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447411 8u8y:D (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447412 8u8y:D (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447413 8u8y:E (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447414 8u8y:E (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447415 8u8y:F (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447416 8u8y:F (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447417 8u8y:G (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447418 8u8y:G (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447419 8u8y:H (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    447420 8u8y:H (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    447421 8u8z:A (3.25) BS01 LBV N/A N/A Q885D3 39127720
    447422 8u8z:B (3.25) BS01 LBV N/A N/A Q885D3 39127720
    447423 8u94:A (1.4) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    447424 8u96:A (1.5) BS01 ATP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    447425 8u97:A (1.5) BS01 ANP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    447426 8u98:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447427 8u98:A (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447428 8u98:A (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447429 8u98:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447430 8u98:B (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447431 8u98:B (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447432 8u98:C (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447433 8u98:C (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447434 8u98:C (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447435 8u98:D (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447436 8u98:D (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447437 8u98:D (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447438 8u99:A (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447439 8u99:A (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447440 8u99:B (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447441 8u99:B (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    447442 8u9a:A (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    447443 8u9a:A (1.5) BS02 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    447444 8u9a:B (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    447445 8u9e:B (3.02) BS01 PO4 N/A GO:0006520 ... A0A0D1HGG1 38782204
    447446 8u9h:A (1.7) BS01 VZB N/A N/A P0DTD1 N/A
    447447 8u9k:A (1.85) BS01 W0B N/A N/A P0DTD1 N/A
    447448 8u9m:A (1.85) BS01 VZT N/A N/A P0DTD1 N/A
    447449 8u9n:A (1.7) BS01 W0L N/A N/A P0DTD1 N/A
    447450 8u9r:A (3.34) BS06 ATP N/A N/A P04050 39190355
    447451 8u9r:B (3.34) BS03 ATP N/A N/A N/A 39190355
    447452 8u9t:A (1.65) BS01 W1L N/A N/A P0DTD1 N/A
    447453 8u9u:A (1.85) BS01 W0W N/A N/A P0DTD1 N/A
    447454 8u9v:A (1.65) BS01 W1C N/A N/A P0DTD1 N/A
    447455 8u9w:A (2.1) BS01 W1U N/A N/A P0DTD1 N/A
    447456 8u9x:A (3.05) BS07 ATP N/A N/A P04050 39190355
    447457 8u9x:B (3.05) BS03 ATP N/A N/A N/A 39190355
    447458 8uab:A (1.781) BS01 W28 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38181791
    447459 8uac:A (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    447460 8uac:B (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    447461 8uae:A (3.25) BS01 AR6 N/A N/A N/A 38096827
    447462 8uae:B (3.25) BS01 AR6 N/A N/A N/A 38096827
    447463 8uae:C (3.25) BS01 AR6 N/A N/A N/A 38096827
    447464 8uae:D (3.25) BS01 AR6 N/A N/A N/A 38096827
    447465 8uae:E (3.25) BS01 AR6 N/A N/A N/A 38096827
    447466 8uae:F (3.25) BS01 AR6 N/A N/A N/A 38096827
    447467 8uae:G (3.25) BS01 AR6 N/A N/A N/A 38096827
    447468 8uae:H (3.25) BS01 AR6 N/A N/A N/A 38096827
    447469 8uae:I (3.25) BS01 AR6 N/A N/A N/A 38096827
    447470 8uae:J (3.25) BS01 AR6 N/A N/A N/A 38096827
    447471 8uae:K (3.25) BS01 AR6 N/A N/A N/A 38096827
    447472 8uae:L (3.25) BS01 AR6 N/A N/A N/A 38096827
    447473 8uae:M (3.25) BS01 AGS N/A N/A N/A 38096827
    447474 8uae:N (3.25) BS01 AGS N/A N/A N/A 38096827
    447475 8uae:O (3.25) BS01 AGS N/A N/A N/A 38096827
    447476 8uae:P (3.25) BS01 AGS N/A N/A N/A 38096827
    447477 8uae:Q (3.25) BS01 AGS N/A N/A N/A 38096827
    447478 8uaf:A (3.18) BS01 AR6 N/A N/A N/A 38096827
    447479 8uaf:B (3.18) BS01 NAD N/A N/A N/A 38096827
    447480 8uaf:C (3.18) BS01 NAD N/A N/A N/A 38096827
    447481 8uaf:D (3.18) BS01 AR6 N/A N/A N/A 38096827
    447482 8uaf:E (3.18) BS01 NAD N/A N/A N/A 38096827
    447483 8uaf:F (3.18) BS01 NAD N/A N/A N/A 38096827
    447484 8uaf:G (3.18) BS01 NAD N/A N/A N/A 38096827
    447485 8uaf:H (3.18) BS01 NAD N/A N/A N/A 38096827
    447486 8uaf:I (3.18) BS01 AR6 N/A N/A N/A 38096827
    447487 8uaf:J (3.18) BS01 NAD N/A N/A N/A 38096827
    447488 8uaf:K (3.18) BS01 AR6 N/A N/A N/A 38096827
    447489 8uaf:L (3.18) BS01 NAD N/A N/A N/A 38096827
    447490 8uaf:M (3.18) BS01 ADP N/A N/A N/A 38096827
    447491 8uaf:N (3.18) BS01 ADP N/A N/A N/A 38096827
    447492 8uaf:O (3.18) BS01 ADP N/A N/A N/A 38096827
    447493 8uaf:P (3.18) BS02 ADP N/A N/A N/A 38096827
    447494 8uaf:Q (3.18) BS01 ADP N/A N/A N/A 38096827
    447495 8uaj:A (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447496 8uaj:B (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447497 8uaj:C (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447498 8uaj:D (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447499 8uak:A (2.82) BS01 W39 2.7.11.13 GO:0004672 ... P17252 38198520
    447500 8uap:A (2.5) BS01 W2T 2.7.11.16 GO:0004672 ... P34947 38016297
    447501 8uaq:A (2.8) BS01 W3F 2.7.11.16 GO:0004672 ... P34947 38016297
    447502 8uar:A (2.99) BS03 W46 N/A N/A N/A N/A
    447503 8uar:B (2.99) BS03 W46 N/A N/A N/A N/A
    447504 8uar:C (2.99) BS03 W46 N/A N/A N/A N/A
    447505 8uar:D (2.99) BS03 W46 N/A N/A N/A N/A
    447506 8uar:E (2.99) BS03 W46 N/A N/A N/A N/A
    447507 8uar:F (2.99) BS03 W46 N/A N/A N/A N/A
    447508 8uar:H (2.99) BS03 W46 N/A N/A N/A N/A
    447509 8uar:I (2.99) BS03 W46 N/A N/A N/A N/A
    447510 8uar:J (2.99) BS03 W46 N/A N/A N/A N/A
    447511 8uar:K (2.99) BS03 W46 N/A N/A N/A N/A
    447512 8uar:L (2.99) BS03 W46 N/A N/A N/A N/A
    447513 8uas:C (2.2) BS03 W3O N/A N/A N/A N/A
    447514 8uas:D (2.2) BS03 W3O N/A N/A N/A N/A
    447515 8uas:E (2.2) BS03 W3O N/A N/A N/A N/A
    447516 8uas:F (2.2) BS03 W3O N/A N/A N/A N/A
    447517 8uas:G (2.2) BS03 W3O N/A N/A N/A N/A
    447518 8uas:H (2.2) BS03 W3O N/A N/A N/A N/A
    447519 8uas:I (2.2) BS03 W3O N/A N/A N/A N/A
    447520 8uas:J (2.2) BS03 W3O N/A N/A N/A N/A
    447521 8uas:K (2.2) BS03 W3O N/A N/A N/A N/A
    447522 8uas:L (2.2) BS01 W3O N/A N/A N/A N/A
    447523 8uat:A (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447524 8uat:A (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    447525 8uat:B (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447526 8uat:B (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    447527 8uat:C (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447528 8uat:D (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447529 8uat:E (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447530 8uat:E (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    447531 8uat:F (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447532 8uat:F (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    447533 8uat:G (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447534 8uat:H (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    447535 8ubq:A (2.001) BS01 W9H N/A N/A P0AEG4 N/A
    447536 8ubq:B (2.001) BS01 SW0 N/A N/A P0AEG4 N/A
    447537 8ubr:A (2.7) BS02 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    447538 8ubr:A (2.7) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    447539 8ubr:A (2.7) BS04 LBN 5.6.1.6 GO:0005254 ... P13569 38422021
    447540 8ubr:A (2.7) BS05 CLR 5.6.1.6 GO:0005254 ... P13569 38422021
    447541 8ubr:A (2.7) BS06 WG5 5.6.1.6 GO:0005254 ... P13569 38422021
    447542 8ubw:A (2.59) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447543 8ubw:A (2.59) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447544 8ubw:A (2.59) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447545 8ubw:A (2.59) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    447546 8ubx:A (2.5) BS01 ETA ? GO:0001568 ... Q9Y5Y0 38693265
    447547 8ubx:A (2.5) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447548 8ubx:A (2.5) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447549 8ubx:A (2.5) BS04 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447550 8uby:A (2.67) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447551 8uby:A (2.67) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447552 8uby:A (2.67) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447553 8uby:A (2.67) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    447554 8ubz:A (3.02) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447555 8ubz:A (3.02) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447556 8ubz:A (3.02) BS03 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    447557 8uc0:A (2.42) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447558 8uc0:A (2.42) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    447559 8uc2:A (1.6) BS01 BEZ 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 38577885
    447560 8uc3:A (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    447561 8uc3:A (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    447562 8uc3:B (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    447563 8uc3:B (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    447564 8uc7:A (2.9) BS01 PFL N/A N/A O60741 39085604
    447565 8uc7:B (2.9) BS01 PFL N/A N/A O60741 39085604
    447566 8uc7:C (2.9) BS01 PFL N/A N/A O60741 39085604
    447567 8uc7:D (2.9) BS01 PFL N/A N/A O60741 39085604
    447568 8uc9:A (2.44) BS01 QBC ? GO:0005085 ... Q07890 38156904
    447569 8ucb:A (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    447570 8ucb:B (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    447571 8ucb:C (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    447572 8ucb:D (1.85) BS01 X1T N/A N/A Q9NWZ3 38467640
    447573 8ucc:A (1.8) BS01 WFQ N/A N/A Q9NWZ3 38467640
    447574 8ucc:B (1.8) BS01 WFQ N/A N/A Q9NWZ3 38467640
    447575 8ucd:A (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    447576 8ucd:A (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    447577 8ucd:A (3.0) BS03 LBN ? GO:0005515 ... Q9UHE8 37861452
    447578 8ucd:A (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    447579 8ucd:B (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    447580 8ucd:B (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    447581 8ucd:B (3.0) BS03 HEM ? GO:0005515 ... Q9UHE8 37861452
    447582 8ucd:C (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    447583 8ucd:C (3.0) BS02 LBN ? GO:0005515 ... Q9UHE8 37861452
    447584 8ucd:C (3.0) BS03 FAD ? GO:0005515 ... Q9UHE8 37861452
    447585 8ucd:C (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    447586 8uce:A (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    447587 8uce:B (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    447588 8uch:A (2.14) BS01 ATP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    447589 8uci:A (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    447590 8uci:B (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    447591 8uct:A (2.93) BS01 3YT 2.7.11.1 GO:0004672 ... D6WMX4 N/A
    447592 8ucu:A (2.85) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    447593 8ucv:A (3.81) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    447594 8ucv:B (3.81) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    447595 8ucw:A (3.64) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    447596 8ud1:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    447597 8ud1:1D (2.1) BS01 SF4 N/A N/A A0A8D1TTB3 38811722
    447598 8ud1:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    447599 8ud1:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    447600 8ud1:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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