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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    437401 8pw9:A (2.3) BS01 H9D 2.1.1.348 GO:0001510 ... Q86U44 38470714
    437402 8pwa:A (2.1) BS01 I0C 2.1.1.348 GO:0001510 ... Q86U44 38470714
    437403 8pwb:A (2.5) BS01 H3I 2.1.1.348 GO:0001510 ... Q86U44 38470714
    437404 8pwd:A (2.8) BS02 FT9 N/A N/A Q9PTN2 N/A
    437405 8pwe:A (2.0) BS02 FUW N/A N/A Q9PTN2 N/A
    437406 8pwf:A (2.3) BS02 FVB N/A N/A Q9PTN2 N/A
    437407 8pwk:A (2.095) BS01 I0H N/A GO:0000118 ... P49773 39190717
    437408 8pwm:A (2.3) BS02 HXI N/A N/A Q9PTN2 N/A
    437409 8pwn:A (2.4) BS01 TEP ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    437410 8pwn:A (2.4) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    437411 8pwn:A (2.4) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    437412 8pwn:A (2.4) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    437413 8pwo:A (2.8) BS01 64Z N/A GO:0003677 ... P03146 N/A
    437414 8pwo:A (2.8) BS02 64Z N/A GO:0003677 ... P03146 N/A
    437415 8pwo:C (2.8) BS01 64Z N/A GO:0003677 ... P03146 N/A
    437416 8pwo:C (2.8) BS02 64Z N/A GO:0003677 ... P03146 N/A
    437417 8pwo:D (2.8) BS01 64Z N/A GO:0003677 ... P03146 N/A
    437418 8pwo:D (2.8) BS02 64Z N/A GO:0003677 ... P03146 N/A
    437419 8pws:A (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    437420 8pws:B (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    437421 8pws:C (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    437422 8pws:D (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    437423 8pws:E (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    437424 8pws:F (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    437425 8pwy:A (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    437426 8pwy:B (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    437427 8pwy:C (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    437428 8pwy:D (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    437429 8pwy:E (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    437430 8pwy:F (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    437431 8px0:A (1.8) BS01 0U 4.6.1.18 GO:0003676 ... P61823 37828292
    437432 8px2:A (1.622) BS01 NUB ? N/A P25440 37967462
    437433 8px8:A (1.603) BS01 I0U ? N/A P25440 37967462
    437434 8px9:A (2.8) BS02 ANP ? GO:0005524 ... Q9X2W0 37828292
    437435 8px9:A (2.8) BS03 ANP ? GO:0005524 ... Q9X2W0 37828292
    437436 8px9:B (2.8) BS01 ANP ? GO:0005524 ... Q9X2W0 37828292
    437437 8px9:B (2.8) BS02 ANP ? GO:0005524 ... Q9X2W0 37828292
    437438 8pxa:AAA (1.3) BS01 I0Z ? N/A O60885 37967462
    437439 8pxi:A (1.2) BS01 D8V N/A N/A P11838 N/A
    437440 8pxk:A (3.77) BS01 FAD ? GO:0000166 ... Q52437 37828292
    437441 8pxl:A (1.6) BS01 FAD ? GO:0000166 ... Q52437 37828292
    437442 8pxm:A (2.378) BS01 ZTY ? N/A O60885 37736196
    437443 8pxm:B (2.378) BS01 ZTY ? N/A O60885 37736196
    437444 8pxn:A (1.952) BS01 ZTT ? N/A O60885 37736196
    437445 8pxn:B (1.952) BS01 ZTT ? N/A O60885 37736196
    437446 8pxn:C (1.952) BS01 ZTT ? N/A O60885 37736196
    437447 8pxn:D (1.952) BS01 ZTT ? N/A O60885 37736196
    437448 8pxp:A (2.01) BS01 HEM N/A N/A A0A7U9DT46 N/A
    437449 8pxp:B (2.01) BS01 HEM N/A N/A A0A7U9DT46 N/A
    437450 8pxv:B (2.5) BS01 GAL 3.2.1.52 GO:0004553 ... B2UN02 38684911
    437451 8pxv:C (2.5) BS01 GAL 3.2.1.52 GO:0004553 ... B2UN02 38684911
    437452 8pxz:A (1.98) BS01 I1V N/A N/A O53223 N/A
    437453 8pxz:A (1.98) BS02 I36 N/A N/A O53223 N/A
    437454 8py3:A (1.65) BS02 I1R N/A N/A Q8IXJ6 38847803
    437455 8py5:A (1.85) BS01 ACV N/A N/A P05326 N/A
    437456 8py6:A (1.52) BS02 ACV N/A N/A P05326 N/A
    437457 8py7:A (1.49) BS01 ACV N/A N/A P05326 N/A
    437458 8py7:A (1.49) BS02 OXY N/A N/A P05326 N/A
    437459 8py8:A (1.46) BS01 IO0 N/A N/A P05326 N/A
    437460 8py8:A (1.46) BS02 ACV N/A N/A P05326 N/A
    437461 8py8:A (1.46) BS03 OXY N/A N/A P05326 N/A
    437462 8py9:A (1.5) BS01 ACV N/A N/A P05326 N/A
    437463 8py9:A (1.5) BS02 OXY N/A N/A P05326 N/A
    437464 8py9:A (1.5) BS04 IO0 N/A N/A P05326 N/A
    437465 8pya:A (1.5) BS01 ACV N/A N/A P05326 N/A
    437466 8pya:A (1.5) BS02 OXY N/A N/A P05326 N/A
    437467 8pya:A (1.5) BS04 IO0 N/A N/A P05326 N/A
    437468 8pyh:A (2.2) BS01 ECH ? GO:0009579 ... K9VSN3 37939760
    437469 8pyh:B (2.2) BS01 ECH ? GO:0009579 ... K9VSN3 37939760
    437470 8pyi:AAA (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437471 8pyi:BBB (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437472 8pyi:CCC (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437473 8pyi:DDD (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437474 8pyi:EEE (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437475 8pyi:FFF (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437476 8pyi:GGG (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437477 8pyi:HHH (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    437478 8pyj:AAA (2.702) BS01 IEA 2.7.10.1 GO:0004672 ... P08069 N/A
    437479 8pyk:AAA (2.23) BS01 IC2 2.7.10.1 GO:0004672 ... P08069 N/A
    437480 8pyl:AAA (2.93) BS01 IE0 2.7.10.1 GO:0004672 ... P08069 N/A
    437481 8pym:AAA (2.652) BS01 IED 2.7.10.1 GO:0004672 ... P08069 N/A
    437482 8pyn:AAA (1.71) BS01 ICV 2.7.10.1 GO:0004672 ... P08069 N/A
    437483 8pyv:A (1.77) BS01 48T 1.11.1.-
    2.5.1.18
    5.3.99.3    		 GO:0001516 ... O14684 37828292
    437484 8pyw:A (1.553) BS01 IF9 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 38096103
    437485 8pyw:B (1.553) BS01 IF9 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 38096103
    437486 8pyw:C (1.553) BS01 IF9 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 38096103
    437487 8pyw:D (1.553) BS01 IF9 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 38096103
    437488 8pyw:E (1.553) BS01 IF9 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 38096103
    437489 8pyw:F (1.553) BS01 IF9 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 38096103
    437490 8pyx:A (2.02) BS01 ADN ? N/A A0A1M5ABR5 38269041
    437491 8pyx:B (2.02) BS01 ADN ? N/A A0A1M5ABR5 38269041
    437492 8pyz:C (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    437493 8pyz:E (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    437494 8pyz:F (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    437495 8pyz:F (2.7) BS02 C8E ? GO:0006811 ... D6QLY1 37828292
    437496 8pz0:A (1.8) BS01 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437497 8pz4:A (1.77) BS03 78M ? GO:0009279 ... P18895 37828292
    437498 8pz4:A (1.77) BS04 78M ? GO:0009279 ... P18895 37828292
    437499 8pz4:A (1.77) BS05 78N ? GO:0009279 ... P18895 37828292
    437500 8pz4:A (1.77) BS06 78N ? GO:0009279 ... P18895 37828292
    437501 8pz4:A (1.77) BS07 78N ? GO:0009279 ... P18895 37828292
    437502 8pz5:A (3.2) BS01 FMN ? GO:0000166 ... B8HTZ1 37828292
    437503 8pz5:A (3.2) BS02 FMN ? GO:0000166 ... B8HTZ1 37828292
    437504 8pz5:B (3.2) BS01 FMN ? GO:0000166 ... B8HTZ1 37828292
    437505 8pz5:B (3.2) BS02 FMN ? GO:0000166 ... B8HTZ1 37828292
    437506 8pz6:A (2.9) BS02 IG5 ? GO:0003677 ... Q9PTN2 38615411
    437507 8pz7:A (2.93) BS02 IG0 ? GO:0003677 ... Q9PTN2 38615411
    437508 8pz8:A (2.64) BS02 IFU ? GO:0003677 ... Q9PTN2 38615411
    437509 8pz9:A (2.74) BS02 IFK ? GO:0003677 ... Q9PTN2 38615411
    437510 8pzb:A (2.73) BS02 I72 ? GO:0003677 ... Q9PTN2 38615411
    437511 8pzk:A (1.8) BS01 ECH ? GO:0009579 ... K9XH36 37939760
    437512 8pzk:A (1.8) BS02 AZI ? GO:0009579 ... K9XH36 37939760
    437513 8pzk:A (1.8) BS03 AZI ? GO:0009579 ... K9XH36 37939760
    437514 8pzk:A (1.8) BS04 AZI ? GO:0009579 ... K9XH36 37939760
    437515 8pzm:A (1.7) BS01 BES 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437516 8pzm:A (1.7) BS02 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437517 8pzy:A (1.97) BS01 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437518 8pzy:B (1.97) BS01 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437519 8pzy:C (1.97) BS01 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437520 8pzy:D (1.97) BS01 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437521 8pzy:E (1.97) BS01 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437522 8pzy:F (1.97) BS01 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437523 8pzy:F (1.97) BS02 P03 3.4.11.1
    3.4.11.10    		 GO:0004177 ... Q02RY8 37924287
    437524 8q03:A (1.48) BS01 BUA N/A N/A N/A N/A
    437525 8q03:B (1.48) BS01 BUA N/A N/A N/A N/A
    437526 8q03:C (1.48) BS01 BUA N/A N/A N/A N/A
    437527 8q0a:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437528 8q0a:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    437529 8q0a:E (3.1) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437530 8q0a:F (3.1) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437531 8q0a:F (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437532 8q0a:G (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437533 8q0a:G (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437534 8q0a:G (3.1) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    437535 8q0a:I (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437536 8q0a:I (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437537 8q0a:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    437538 8q0a:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    437539 8q0a:T (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    437540 8q0a:U (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    437541 8q0a:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    437542 8q0a:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    437543 8q0f:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437544 8q0f:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    437545 8q0f:E (3.1) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437546 8q0f:F (3.1) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437547 8q0f:F (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437548 8q0f:G (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437549 8q0f:G (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437550 8q0f:G (3.1) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    437551 8q0f:I (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437552 8q0f:I (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437553 8q0f:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    437554 8q0f:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    437555 8q0f:U (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    437556 8q0f:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    437557 8q0f:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    437558 8q0j:B (3.8) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437559 8q0j:E (3.8) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437560 8q0j:F (3.8) BS01 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437561 8q0j:F (3.8) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437562 8q0j:G (3.8) BS01 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    437563 8q0j:G (3.8) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437564 8q0j:G (3.8) BS03 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437565 8q0j:I (3.8) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437566 8q0j:I (3.8) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437567 8q0j:O (3.8) BS01 DGT ? GO:0005737 ... P34942 38870289
    437568 8q0j:P (3.8) BS01 NDP ? GO:0005739 ... P34943 38870289
    437569 8q0j:W (3.8) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    437570 8q0j:n (3.8) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    437571 8q0m:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437572 8q0m:B (3.1) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    437573 8q0m:D (3.1) BS01 U10 7.1.1.2 GO:0003954 ... P17694 38870289
    437574 8q0m:E (3.1) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437575 8q0m:F (3.1) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437576 8q0m:F (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437577 8q0m:G (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437578 8q0m:G (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437579 8q0m:G (3.1) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    437580 8q0m:H (3.1) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    437581 8q0m:I (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437582 8q0m:I (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437583 8q0m:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    437584 8q0m:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    437585 8q0m:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    437586 8q0m:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    437587 8q0n:B (4.2) BS01 04E 2.3.2.26 GO:0000139 ... Q8IYU2 38332367
    437588 8q0n:C (4.2) BS01 GTP 3.6.5.2 GO:0001764 ... P63000 38332367
    437589 8q0o:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437590 8q0o:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    437591 8q0o:E (3.1) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437592 8q0o:F (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437593 8q0o:F (3.1) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437594 8q0o:G (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437595 8q0o:G (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437596 8q0o:G (3.1) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    437597 8q0o:I (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437598 8q0o:I (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437599 8q0o:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    437600 8q0o:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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