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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    430801 8jsc:C (2.16) BS02 NAP 1.6.5.- GO:0003677 ... Q9BRQ8 37739993
    430802 8jsk:A (2.401) BS01 6SY N/A N/A N/A 38965224
    430803 8jso:R (3.4) BS01 1WE ? GO:0001594 ... P0ABE7
    Q96RJ0    		 37935376
    430804 8jsp:R (3.65) BS01 UJL ? GO:0001586 ... P08908 37935376
    430805 8jsv:A (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430806 8jsv:B (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430807 8jsv:C (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430808 8jsv:D (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430809 8jsv:E (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430810 8jsv:F (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430811 8jsv:G (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430812 8jsv:H (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430813 8jsv:I (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430814 8jsv:J (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430815 8jsw:A (2.84) BS01 SRO ? GO:0016020 ... Q05940 38081299
    430816 8jsx:A (3.16) BS01 E5E ? GO:0016020 ... Q05940 N/A
    430817 8jsy:A (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430818 8jsy:B (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430819 8jsy:C (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430820 8jsy:D (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430821 8jsy:E (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430822 8jsy:F (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430823 8jsy:G (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430824 8jsy:H (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430825 8jsy:I (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430826 8jsy:J (2.55) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430827 8jt0:A (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430828 8jt0:B (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430829 8jt0:C (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430830 8jt0:D (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430831 8jt0:E (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430832 8jt0:F (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430833 8jt0:G (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430834 8jt0:H (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430835 8jt0:I (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430836 8jt0:J (2.2) BS01 NAP N/A N/A A0AA40WBR8 N/A
    430837 8jt3:A (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430838 8jt3:A (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430839 8jt3:B (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430840 8jt3:B (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430841 8jt3:C (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430842 8jt3:C (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430843 8jt3:D (2.35) BS01 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430844 8jt3:D (2.35) BS02 EQJ ? GO:0008483 ... H8Y6N2 37451216
    430845 8jt5:A (3.06) BS01 HSM ? GO:0016020 ... Q05940 N/A
    430846 8jt6:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7    		 38552625
    430847 8jt6:R (3.0) BS02 CLR ? GO:0001586 ... P08908
    P0ABE7    		 38552625
    430848 8jt6:R (3.0) BS03 J40 ? GO:0001586 ... P08908
    P0ABE7    		 38552625
    430849 8jt6:R (3.0) BS04 EZX ? GO:0001586 ... P08908
    P0ABE7    		 38552625
    430850 8jt7:A (2.34) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    430851 8jt8:A (2.7) BS02 EZX ? GO:0004930 ... P0ABE7
    P28223    		 38552625
    430852 8jt8:A (2.7) BS03 CLR ? GO:0004930 ... P0ABE7
    P28223    		 38552625
    430853 8jt8:A (2.7) BS04 CLR ? GO:0004930 ... P0ABE7
    P28223    		 38552625
    430854 8jt9:A (2.97) BS01 UYX ? GO:0016020 ... Q05940 38081299
    430855 8jta:A (3.36) BS01 YHL ? GO:0016020 ... Q05940 38081299
    430856 8jtb:A (2.93) BS01 LDP ? GO:0016020 ... Q05940 N/A
    430857 8jtc:A (3.52) BS01 YHR ? GO:0016020 ... Q05940 38081299
    430858 8jtd:J (4.9) BS01 BMA N/A N/A N/A 38665238
    430859 8jtd:J (4.9) BS02 MAN N/A N/A N/A 38665238
    430860 8jtd:N (4.9) BS01 MAN N/A N/A N/A 38665238
    430861 8jtm:J (5.14) BS01 BMA N/A N/A N/A 38665238
    430862 8jtm:J (5.14) BS02 MAN N/A N/A N/A 38665238
    430863 8jtn:A (1.8) BS01 F5W ? N/A Q9H7E2 37499935
    430864 8jtn:A (1.8) BS02 F5W ? N/A Q9H7E2 37499935
    430865 8jtn:A (1.8) BS03 F5W ? N/A Q9H7E2 37499935
    430866 8jto:A (2.25) BS01 C8E N/A GO:0006811 ... A0A069BCC8 N/A
    430867 8jto:A (2.25) BS02 C8E N/A GO:0006811 ... A0A069BCC8 N/A
    430868 8jtt:A (3.87) BS01 MF8 ? GO:0005277 ... O15245 38485705
    430869 8jtv:A (3.77) BS01 MF8 ? GO:0005277 ... O15245 38485705
    430870 8jtz:A (3.27) BS01 SNL ? GO:0005277 ... O15245 38485705
    430871 8ju0:A (2.98) BS01 SNL ? GO:0005277 ... O15245 38485705
    430872 8ju4:A (2.3) BS01 FAD N/A GO:0000166 ... Q9RA02 N/A
    430873 8ju4:A (2.3) BS02 ANB N/A GO:0000166 ... Q9RA02 N/A
    430874 8ju5:B (3.74) BS01 F3L ? GO:0000122 ... Q9HBA0 38659239
    430875 8ju5:D (3.74) BS01 F3L ? GO:0000122 ... Q9HBA0 38659239
    430876 8ju6:A (3.45) BS01 XPW ? GO:0000122 ... Q9HBA0 38659239
    430877 8ju6:B (3.45) BS01 XPW ? GO:0000122 ... Q9HBA0 38659239
    430878 8ju6:C (3.45) BS01 XPW ? GO:0000122 ... Q9HBA0 38659239
    430879 8ju6:D (3.45) BS01 XPW ? GO:0000122 ... Q9HBA0 38659239
    430880 8ju9:A (2.0) BS01 KDP ? GO:0003677 ... Q9HTC8 38477394
    430881 8jua:A (2.00001) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    430882 8jua:A (2.00001) BS02 F7Z ? GO:0004497 ... A0A0B4ZV78 37917570
    430883 8jua:B (2.00001) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    430884 8jua:B (2.00001) BS02 F7Z ? GO:0004497 ... A0A0B4ZV78 37917570
    430885 8jub:A (2.01) BS01 V4I 3.5.1.2 GO:0004359 ... O94925 37849538
    430886 8jub:B (2.01) BS01 V4I 3.5.1.2 GO:0004359 ... O94925 37849538
    430887 8jub:C (2.01) BS01 V4I 3.5.1.2 GO:0004359 ... O94925 37849538
    430888 8jub:D (2.01) BS01 V4I 3.5.1.2 GO:0004359 ... O94925 37849538
    430889 8juc:A (1.54) BS01 V23 2.3.2.23 N/A Q9NPD8 38358126
    430890 8jue:A (2.39) BS01 V59 3.5.1.2 GO:0004359 ... O94925 37849538
    430891 8jue:B (2.39) BS01 V59 3.5.1.2 GO:0004359 ... O94925 37849538
    430892 8jue:C (2.39) BS01 V59 3.5.1.2 GO:0004359 ... O94925 37849538
    430893 8jue:D (2.39) BS01 V59 3.5.1.2 GO:0004359 ... O94925 37849538
    430894 8jui:A (2.2) BS01 PLP N/A GO:0003824 ... Q818J6 N/A
    430895 8juj:A (1.99) BS01 PLP N/A GO:0003824 ... Q816F3 N/A
    430896 8juj:B (1.99) BS01 PLP N/A GO:0003824 ... Q816F3 N/A
    430897 8juj:B (1.99) BS02 PLP N/A GO:0003824 ... Q816F3 N/A
    430898 8jup:A (1.98) BS01 ATP 2.7.11.1 GO:0004672 ... Q0JA29 N/A
    430899 8juq:A (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    430900 8juq:A (2.21) BS02 C8E N/A GO:0006811 ... L0RVU0 N/A
    430901 8juq:B (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    430902 8juq:B (2.21) BS02 C8E N/A GO:0006811 ... L0RVU0 N/A
    430903 8juq:C (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    430904 8juq:C (2.21) BS02 C8E N/A GO:0006811 ... L0RVU0 N/A
    430905 8juq:C (2.21) BS03 C8E N/A GO:0006811 ... L0RVU0 N/A
    430906 8juq:G (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    430907 8juq:H (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    430908 8jur:A (2.92) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    430909 8jur:A (2.92) BS02 LLL N/A GO:0006811 ... L0RVU0 N/A
    430910 8jur:B (2.92) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    430911 8jus:A (1.73) BS01 A2P N/A GO:0004073 ... A0AAF0BGE9 N/A
    430912 8jus:B (1.73) BS01 A2P N/A GO:0004073 ... A0AAF0BGE9 N/A
    430913 8juv:A (2.09) BS01 ADP 2.7.11.1 GO:0004672 ... Q0JA29 N/A
    430914 8juw:A (3.79) BS01 ADP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430915 8juw:A (3.79) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430916 8juw:B (3.79) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430917 8juw:B (3.79) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430918 8juw:C (3.79) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430919 8juw:C (3.79) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430920 8juw:D (3.79) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430921 8juw:D (3.79) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430922 8juw:E (3.79) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430923 8juw:F (3.79) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430924 8jux:A (3.2) BS01 V00 N/A N/A P0DTD1 N/A
    430925 8jux:B (3.2) BS01 V00 N/A N/A P0DTD1 N/A
    430926 8jux:B (3.2) BS02 V00 N/A N/A P0DTD1 N/A
    430927 8juy:A (4.34) BS01 ADP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430928 8juy:A (4.34) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430929 8juy:B (4.34) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430930 8juy:B (4.34) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430931 8juy:C (4.34) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430932 8juy:C (4.34) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430933 8juy:D (4.34) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430934 8juy:D (4.34) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430935 8juy:E (4.34) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430936 8juy:E (4.34) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430937 8juy:F (4.34) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430938 8juz:A (4.29) BS01 ADP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430939 8juz:A (4.29) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430940 8juz:B (4.29) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430941 8juz:B (4.29) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430942 8juz:C (4.29) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430943 8juz:C (4.29) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430944 8juz:D (4.29) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430945 8juz:D (4.29) BS02 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430946 8juz:E (4.29) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430947 8juz:F (4.29) BS01 ATP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    430948 8jv1:A (1.309) BS01 ABU N/A N/A B6BQH5 N/A
    430949 8jv2:A (1.3) BS01 PRO N/A N/A B6BQH5 N/A
    430950 8jv4:A (1.445) BS01 DQY N/A N/A B6BQH5 N/A
    430951 8jv5:A (3.23) BS01 P73 ? GO:0001614 ... F8W463 37833294
    430952 8jv5:B (3.23) BS01 P73 ? GO:0001614 ... F8W463 37833294
    430953 8jv5:C (3.23) BS01 P73 ? GO:0001614 ... F8W463 37833294
    430954 8jv6:A (3.43) BS01 P6E ? GO:0001614 ... F8W463 37833294
    430955 8jv6:B (3.43) BS01 P6E ? GO:0001614 ... F8W463 37833294
    430956 8jv6:C (3.43) BS01 P6E ? GO:0001614 ... F8W463 37833294
    430957 8jv7:A (3.6) BS01 UO6 ? GO:0001614 ... G1M6C4 38578670
    430958 8jv7:B (3.6) BS01 UO6 ? GO:0001614 ... G1M6C4 38578670
    430959 8jv7:C (3.6) BS01 UO6 ? GO:0001614 ... G1M6C4 38578670
    430960 8jv8:A (3.34) BS01 20V ? GO:0001614 ... G1M6C4 38578670
    430961 8jv8:A (3.34) BS02 20V ? GO:0001614 ... G1M6C4 38578670
    430962 8jv8:B (3.34) BS01 20V ? GO:0001614 ... G1M6C4 38578670
    430963 8jv8:B (3.34) BS02 20V ? GO:0001614 ... G1M6C4 38578670
    430964 8jv8:C (3.34) BS01 20V ? GO:0001614 ... G1M6C4 38578670
    430965 8jv8:C (3.34) BS02 20V ? GO:0001614 ... G1M6C4 38578670
    430966 8jvd:A (1.696) BS01 V2R 2.3.2.23 N/A Q9NPD8 38358126
    430967 8jve:A (1.76) BS01 V6C 2.3.2.23 N/A Q9NPD8 37979329
    430968 8jvf:A (2.4) BS01 GTP N/A GO:0015937 ... Q5JIY7 38235908
    430969 8jvi:A (3.21) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430970 8jvi:B (3.21) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430971 8jvi:C (3.21) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430972 8jvi:D (3.21) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430973 8jvj:A (3.44) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430974 8jvj:B (3.44) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430975 8jvj:C (3.44) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430976 8jvj:D (3.44) BS01 F9M ? GO:0000122 ... Q9HBA0 38659239
    430977 8jvl:A (2.06) BS01 V5L 2.3.2.23 N/A Q9NPD8 37979329
    430978 8jw0:A (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    430979 8jw0:A (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    430980 8jw0:A (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    430981 8jw0:A (2.9) BS04 UIX N/A GO:0009765 ... N/A 38319970
    430982 8jw0:A (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    430983 8jw0:A (2.9) BS06 KC1 N/A GO:0009765 ... N/A 38319970
    430984 8jw0:A (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    430985 8jw0:A (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    430986 8jw0:A (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    430987 8jw0:A (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    430988 8jw0:A (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    430989 8jw0:A (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    430990 8jw0:A (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    430991 8jw0:A (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    430992 8jw0:A (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    430993 8jw0:A (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    430994 8jw0:A (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    430995 8jw0:A (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    430996 8jw0:A (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    430997 8jw0:A (2.9) BS20 DD6 N/A GO:0009765 ... N/A 38319970
    430998 8jw0:A (2.9) BS21 CLA N/A GO:0009765 ... N/A 38319970
    430999 8jw0:B (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431000 8jw0:B (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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