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BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i54:A (1.5) BS02 ZNH ? GO:0005739 ... P81459 11296248
    2 1i54:B (1.5) BS02 ZNH ? GO:0005739 ... P81459 11296248
    3 1i55:A (2.0) BS02 ZNH ? GO:0005739 ... P81459 11296248
    4 1i55:B (2.0) BS02 ZNH ? GO:0005739 ... P81459 11296248
    5 1u74:A (2.4) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 15339156
    6 1u74:C (2.4) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 15339156
    7 1u75:A (2.55) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 15339156
    8 1u75:C (2.55) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 15339156
    9 1ygd:A (2.73) BS01 ZNH ? GO:0004601 ... P69905 15835899
    10 1ygd:C (2.73) BS01 ZNH ? GO:0004601 ... P69905 15835899
    11 2b0z:A (2.7) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 16227441
    12 2b10:A (2.8) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 16227441
    13 2b10:C (2.8) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 16227441
    14 2b11:A (2.3) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 16227441
    15 2b11:B (2.3) BS01 ZNH ? GO:0005515 ... P00044 16227441
    16 2b12:A (3.02) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 16227441
    17 2bcn:A (1.7) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 16478190
    18 2bcn:C (1.7) BS01 ZNH 1.11.1.5 GO:0004601 ... P00431 16478190
    19 2k78:A (-1.00) BS01 ZNH ? GO:0009274 ... Q7A151 18715872
    20 3ase:A (1.75) BS01 ZNH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 21495132
    21 4mec:A (3.2) BS01 ZNH 1.14.14.18 GO:0004392 ... P06762 25496210
    22 4mec:B (3.2) BS01 ZNH 1.14.14.18 GO:0004392 ... P06762 25496210
    23 4mec:C (3.2) BS01 ZNH 1.14.14.18 GO:0004392 ... P06762 25496210
    24 4mec:C (3.2) BS02 ZNH 1.14.14.18 GO:0004392 ... P06762 25496210
    25 4mec:D (3.2) BS01 ZNH 1.14.14.18 GO:0004392 ... P06762 25496210
    26 4mec:E (3.2) BS01 ZNH 1.14.14.18 GO:0004392 ... P06762 25496210
    27 4mxk:A (1.52) BS01 ZNH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 24481708
    28 4mxl:A (1.5) BS01 ZNH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 24481708
    29 6p8k:A (1.7) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    30 6p8k:B (1.7) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    31 6p8k:C (1.7) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    32 6p8k:D (1.7) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    33 6p8k:E (1.7) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    34 6p8k:F (1.7) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    35 6p8k:G (1.7) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    36 6p8k:H (1.7) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    37 6p8k:I (1.7) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    38 6p8k:J (1.7) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    39 6p8k:K (1.7) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    40 6p8k:L (1.7) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    41 6p8l:A (2.1) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    42 6p8l:B (2.1) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    43 6p8l:C (2.1) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    44 6p8l:D (2.1) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    45 6p8l:E (2.1) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    46 6p8l:F (2.1) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    47 6p8l:G (2.1) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    48 6p8l:H (2.1) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    49 6p8l:I (2.1) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    50 6p8l:J (2.1) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    51 6p8l:K (2.1) BS02 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    52 6p8l:L (2.1) BS01 ZNH 1.16.3.1 GO:0004322 ... P0ABD3 32283930
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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