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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h3e:A (2.9) BS03 TYE 6.1.1.1 GO:0000166 ... P83453 12110594
    2 1h3f:A (2.0) BS01 TYE 6.1.1.1 GO:0000166 ... P83453 12110594
    3 1h3f:B (2.0) BS01 TYE 6.1.1.1 GO:0000166 ... P83453 12110594
    4 1q11:A (1.6) BS01 TYE 6.1.1.1 GO:0000166 ... P54577 14671330
    5 2j5b:A (2.2) BS01 TYE 6.1.1.1 GO:0000166 ... Q5UPJ7 17855524
    6 2j5b:B (2.2) BS01 TYE 6.1.1.1 GO:0000166 ... Q5UPJ7 17855524
    7 2j5b:B (2.2) BS02 TYE 6.1.1.1 GO:0000166 ... Q5UPJ7 17855524
    8 3p0i:A (3.13) BS01 TYE 6.1.1.1 GO:0000166 ... Q4QFJ7 21420975
    9 3p0i:B (3.13) BS01 TYE 6.1.1.1 GO:0000166 ... Q4QFJ7 21420975
    10 3p0j:A (2.89) BS01 TYE 6.1.1.1 GO:0000166 ... Q4QFJ7 21420975
    11 3p0j:B (2.89) BS01 TYE 6.1.1.1 GO:0000166 ... Q4QFJ7 21420975
    12 3p0j:C (2.89) BS01 TYE 6.1.1.1 GO:0000166 ... Q4QFJ7 21420975
    13 3p0j:D (2.89) BS01 TYE 6.1.1.1 GO:0000166 ... Q4QFJ7 21420975
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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