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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ji6:A (2.06) BS01 TPW 4.1.1.8 GO:0000166 ... P40149 17637344
    2 2ji6:A (2.06) BS05 TPW 4.1.1.8 GO:0000166 ... P40149 17637344
    3 2ji6:B (2.06) BS01 TPW 4.1.1.8 GO:0000166 ... P40149 17637344
    4 2ji6:B (2.06) BS03 TPW 4.1.1.8 GO:0000166 ... P40149 17637344
    5 2ji9:A (2.2) BS01 TPW 4.1.1.8 GO:0000166 ... P40149 17637344
    6 2ji9:A (2.2) BS04 TPW 4.1.1.8 GO:0000166 ... P40149 17637344
    7 2ji9:B (2.2) BS01 TPW 4.1.1.8 GO:0000166 ... P40149 17637344
    8 2q5j:A (3.2) BS02 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    9 2q5j:A (3.2) BS03 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    10 2q5j:B (3.2) BS01 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    11 2q5j:B (3.2) BS03 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    12 2q5o:A (2.15) BS02 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    13 2q5o:A (2.15) BS05 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    14 2q5o:B (2.15) BS01 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    15 2q5o:B (2.15) BS04 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    16 2q5q:A (1.9) BS02 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    17 2q5q:A (1.9) BS05 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    18 2q5q:B (1.9) BS01 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    19 2q5q:B (1.9) BS04 TPW 4.1.1.74 GO:0000287 ... P51852 17905741
    20 3dv0:A (2.5) BS02 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    21 3dv0:B (2.5) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    22 3dv0:C (2.5) BS02 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    23 3dv0:D (2.5) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    24 3dv0:E (2.5) BS01 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    25 3dv0:F (2.5) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    26 3dv0:G (2.5) BS01 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    27 3dv0:H (2.5) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    28 3dva:A (2.35) BS02 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    29 3dva:B (2.35) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    30 3dva:C (2.35) BS02 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    31 3dva:D (2.35) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    32 3dva:E (2.35) BS01 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    33 3dva:F (2.35) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    34 3dva:G (2.35) BS01 TPW 1.2.4.1 GO:0004739 ... P21873 19081062
    35 3dva:H (2.35) BS01 TPW 1.2.4.1 GO:0003824 ... P21874 19081062
    36 7pt1:A (1.553) BS01 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    37 7pt1:A (1.553) BS04 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    38 7pt1:B (1.553) BS01 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    39 7pt1:B (1.553) BS03 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    40 7pt2:A (1.762) BS01 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    41 7pt2:A (1.762) BS05 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    42 7pt2:B (1.762) BS01 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    43 7pt2:B (1.762) BS03 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    44 7pt3:A (1.625) BS01 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    45 7pt3:A (1.625) BS04 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    46 7pt3:B (1.625) BS01 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    47 7pt3:B (1.625) BS02 TPW 4.1.-.- GO:0000287 ... P0DUV9 34952003
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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