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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b7e:A (2.9) BS01 TPT 3.1.-.- GO:0003677 ... Q46731 10207011
    2 1b7e:A (2.9) BS02 TPT 3.1.-.- GO:0003677 ... Q46731 10207011
    3 1hcx:A (2.6) BS01 TPT 3.5.1.28 N/A P06653 11694890
    4 1qnq:A (1.65) BS01 TPT 3.2.1.78 GO:0000272 ... Q99036 10666621
    5 1qnq:A (1.65) BS02 TPT 3.2.1.78 GO:0000272 ... Q99036 10666621
    6 2zzb:B (3.2) BS02 TPT 1.11.1.2
    1.8.1.9    		 GO:0004791 ... Q16881 19525010
    7 2zzb:C (3.2) BS02 TPT 1.11.1.2
    1.8.1.9    		 GO:0004791 ... Q16881 19525010
    8 2zzb:D (3.2) BS02 TPT 1.11.1.2
    1.8.1.9    		 GO:0004791 ... Q16881 19525010
    9 3ro0:A (1.5) BS01 TPT 3.4.19.3 GO:0005737 ... P46107 21875148 PDBbind: -logKd/Ki=4.50, IC50=31.89uM
    10 3ro0:B (1.5) BS01 TPT 3.4.19.3 GO:0005737 ... P46107 21875148
    11 3ro0:C (1.5) BS01 TPT 3.4.19.3 GO:0005737 ... P46107 21875148
    12 3ro0:D (1.5) BS01 TPT 3.4.19.3 GO:0005737 ... P46107 21875148
    13 3ro0:D (1.5) BS02 TPT 3.4.19.3 GO:0005737 ... P46107 21875148
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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