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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 159 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1evk:B (2.0) BS02 THR 6.1.1.3 GO:0000166 ... P0A8M3 10881191
    2 1h73:A (2.0) BS01 THR 2.7.1.39 GO:0004413 ... Q58504 11535056
    3 1kjo:A (1.6) BS06 THR 3.4.24.27 GO:0004222 ... P00800 N/A
    4 1nyr:A (2.8) BS04 THR 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    5 1nyr:B (2.8) BS03 THR 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    6 1oew:A (0.9) BS02 THR 3.4.23.22 GO:0004190 ... P11838 12876323
    7 2dt9:A (2.15) BS01 THR 2.7.2.4 N/A P61489 19490113
    8 2dt9:A (2.15) BS02 THR 2.7.2.4 N/A P61489 19490113
    9 2dt9:B (2.15) BS01 THR 2.7.2.4 N/A P61489 19490113
    10 2dt9:B (2.15) BS02 THR 2.7.2.4 N/A P61489 19490113
    11 2dtj:A (1.58) BS01 THR 2.7.2.4 N/A P26512 17350037
    12 2dtj:A (1.58) BS02 THR 2.7.2.4 N/A P26512 17350037
    13 2dtj:B (1.58) BS01 THR 2.7.2.4 N/A P26512 17350037
    14 2dtj:B (1.58) BS02 THR 2.7.2.4 N/A P26512 17350037
    15 3a9w:A (1.85) BS01 THR 1.1.1.103 GO:0000166 ... Q97BK3 22374996
    16 3a9w:B (1.85) BS01 THR 1.1.1.103 GO:0000166 ... Q97BK3 22374996
    17 3aaw:A (2.5) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    18 3aaw:A (2.5) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    19 3aaw:B (2.5) BS01 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    20 3aaw:B (2.5) BS03 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    21 3aaw:C (2.5) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    22 3aaw:C (2.5) BS04 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    23 3aaw:D (2.5) BS02 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    24 3aaw:D (2.5) BS03 THR 2.7.2.4 GO:0004072 ... Q93C54 20573952
    25 3ab2:A (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    26 3ab2:A (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    27 3ab2:B (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    28 3ab2:B (2.59) BS02 THR 2.7.2.4 N/A P26512 20573952
    29 3ab2:C (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    30 3ab2:C (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    31 3ab2:D (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    32 3ab2:E (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    33 3ab2:E (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    34 3ab2:F (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    35 3ab2:F (2.59) BS02 THR 2.7.2.4 N/A P26512 20573952
    36 3ab2:G (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    37 3ab2:G (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    38 3ab2:H (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    39 3ab2:H (2.59) BS02 THR 2.7.2.4 N/A P26512 20573952
    40 3ab2:I (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    41 3ab2:J (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    42 3ab2:K (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    43 3ab2:K (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    44 3ab2:L (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    45 3ab2:L (2.59) BS02 THR 2.7.2.4 N/A P26512 20573952
    46 3ab2:M (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    47 3ab2:M (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    48 3ab2:N (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    49 3ab2:O (2.59) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    50 3ab2:O (2.59) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    51 3ab2:P (2.59) BS01 THR 2.7.2.4 N/A P26512 20573952
    52 3ab2:P (2.59) BS02 THR 2.7.2.4 N/A P26512 20573952
    53 3ab4:A (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    54 3ab4:A (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    55 3ab4:B (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    56 3ab4:B (2.47) BS03 THR 2.7.2.4 N/A P26512 20573952
    57 3ab4:C (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    58 3ab4:C (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    59 3ab4:D (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    60 3ab4:D (2.47) BS03 THR 2.7.2.4 N/A P26512 20573952
    61 3ab4:E (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    62 3ab4:E (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    63 3ab4:F (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    64 3ab4:F (2.47) BS03 THR 2.7.2.4 N/A P26512 20573952
    65 3ab4:G (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    66 3ab4:G (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    67 3ab4:H (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    68 3ab4:H (2.47) BS03 THR 2.7.2.4 N/A P26512 20573952
    69 3ab4:I (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    70 3ab4:I (2.47) BS02 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    71 3ab4:J (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    72 3ab4:J (2.47) BS02 THR 2.7.2.4 N/A P26512 20573952
    73 3ab4:K (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    74 3ab4:K (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    75 3ab4:L (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    76 3ab4:L (2.47) BS03 THR 2.7.2.4 N/A P26512 20573952
    77 3ab4:M (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    78 3ab4:M (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    79 3ab4:N (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    80 3ab4:N (2.47) BS03 THR 2.7.2.4 N/A P26512 20573952
    81 3ab4:O (2.47) BS01 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    82 3ab4:O (2.47) BS03 THR 2.7.2.4 GO:0004072 ... P26512 20573952
    83 3ab4:P (2.47) BS01 THR 2.7.2.4 N/A P26512 20573952
    84 3ab4:P (2.47) BS03 THR 2.7.2.4 N/A P26512 20573952
    85 3aje:A (1.8) BS01 THR 2.7.7.87 GO:0000049 ... Q970S6 21538543 PDBbind: -logKd/Ki=5.03, Kd=9.3uM
    86 3c1n:A (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    87 3c1n:A (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    88 3c1n:A (2.72) BS03 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    89 3c1n:B (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    90 3c1n:B (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    91 3c1n:B (2.72) BS03 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    92 3c1n:C (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    93 3c1n:C (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    94 3c1n:D (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    95 3c1n:D (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    96 3l76:A (2.54) BS01 THR 2.7.2.4 GO:0004072 ... P74569 20398676
    97 3l76:A (2.54) BS02 THR 2.7.2.4 GO:0004072 ... P74569 20398676
    98 3l76:B (2.54) BS01 THR 2.7.2.4 GO:0004072 ... P74569 20398676
    99 3l76:B (2.54) BS02 THR 2.7.2.4 GO:0004072 ... P74569 20398676
    100 3s1t:A (1.63) BS01 THR 2.7.2.4 N/A P9WPX3 N/A
    101 3s1t:A (1.63) BS02 THR 2.7.2.4 N/A P9WPX3 N/A
    102 3s1t:B (1.63) BS01 THR 2.7.2.4 N/A P9WPX3 N/A
    103 3s1t:B (1.63) BS02 THR 2.7.2.4 N/A P9WPX3 N/A
    104 3wmx:A (2.5) BS02 THR 5.3.-.- GO:0000166 ... Q0K312 24558034
    105 3wmx:B (2.5) BS02 THR 5.3.-.- GO:0000166 ... Q0K312 24558034
    106 3zsw:A (1.8) BS01 THR 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 22808106
    107 3zsw:B (1.8) BS02 THR 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 22808106
    108 4ger:A (1.59) BS05 THR 3.4.24.28 GO:0004222 ... P29148 23275160
    109 4ger:B (1.59) BS05 THR 3.4.24.28 GO:0004222 ... P29148 23275160
    110 4go7:X (2.0) BS01 THR 2.7.2.4 N/A P9WPX3 21976064
    111 4qfp:A (1.903) BS02 THR ? GO:0015833 ... A7Y7W1 25605306 PDBbind: -logKd/Ki=4.23, Kd=58.6uM
    112 4qfp:B (1.903) BS02 THR ? GO:0015833 ... A7Y7W1 25605306
    113 5ixj:A (1.54) BS01 THR 4.2.1.20 GO:0000162 ... Q8U093 27355405
    114 5ixj:B (1.54) BS01 THR 4.2.1.20 GO:0000162 ... Q8U093 27355405
    115 5ixj:C (1.54) BS01 THR 4.2.1.20 GO:0000162 ... Q8U093 27355405
    116 5ixj:D (1.54) BS01 THR 4.2.1.20 GO:0000162 ... Q8U093 27355405
    117 5k4w:A (1.72) BS02 THR 1.1.1.103 N/A Q7YW97 30198897
    118 5k4w:C (1.72) BS02 THR 1.1.1.103 N/A Q7YW97 30198897
    119 5n9x:A (2.396) BS01 THR ? GO:0003824 ... H6SG27 28704585
    120 5yei:A (2.301) BS01 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    121 5yei:A (2.301) BS03 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    122 5yei:B (2.301) BS01 THR 2.7.2.4 N/A O69077 29382741
    123 5yei:B (2.301) BS03 THR 2.7.2.4 N/A O69077 29382741
    124 5yei:C (2.301) BS01 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    125 5yei:C (2.301) BS02 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    126 5yei:D (2.301) BS01 THR 2.7.2.4 N/A O69077 29382741
    127 5yei:D (2.301) BS02 THR 2.7.2.4 N/A O69077 29382741
    128 5yei:E (2.301) BS01 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    129 5yei:E (2.301) BS02 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    130 5yei:F (2.301) BS01 THR 2.7.2.4 N/A O69077 29382741
    131 5yei:F (2.301) BS02 THR 2.7.2.4 N/A O69077 29382741
    132 5yei:G (2.301) BS01 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    133 5yei:G (2.301) BS03 THR 2.7.2.4 GO:0004072 ... O69077 29382741
    134 5yei:H (2.301) BS01 THR 2.7.2.4 N/A O69077 29382741
    135 5yei:H (2.301) BS03 THR 2.7.2.4 N/A O69077 29382741
    136 6f87:A (2.62) BS02 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    137 6f87:B (2.62) BS02 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    138 6f87:C (2.62) BS02 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    139 6f87:D (2.62) BS02 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    140 6f89:A (2.81) BS02 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    141 6f89:B (2.81) BS02 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    142 6f8y:A (2.86) BS01 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    143 6f8y:B (2.86) BS01 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    144 6f8y:C (2.86) BS01 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    145 6f8y:D (2.86) BS01 THR 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    146 6gyp:B (3.6) BS05 THR ? GO:0000775 ... P40969 30478265
    147 6tth:A (2.6) BS02 THR 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31877353
    148 6tth:B (2.6) BS02 THR 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31877353
    149 6tth:C (2.6) BS01 THR 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31877353
    150 6tth:D (2.6) BS01 THR 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31877353
    151 6ywz:A (2.12) BS02 THR ? N/A Q9Y566 34163995
    152 6ywz:B (2.12) BS02 THR ? N/A Q9Y566 34163995
    153 6yx1:A (1.8) BS02 THR ? N/A Q9Y566 34163995
    154 6yx1:B (1.8) BS02 THR ? N/A Q9Y566 34163995
    155 7eps:A (2.102) BS02 THR N/A N/A N/A 34254784
    156 7eps:B (2.102) BS02 THR N/A N/A N/A 34254784
    157 7eps:C (2.102) BS02 THR N/A N/A N/A 34254784
    158 7eps:D (2.102) BS02 THR N/A N/A N/A 34254784
    159 7uio:Bc (3.3) BS01 THR ? GO:0000122 ... P40356 36731470
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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