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BioLiP Library
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kzi:A (1.75) BS03 THG 2.1.1.45 GO:0000287 ... P0A884 12033935
    2 1kzi:B (1.75) BS03 THG 2.1.1.45 GO:0000287 ... P0A884 12033935
    3 1m7v:A (1.95) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    4 1m7z:A (2.14) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    5 1u22:A (2.65) BS03 THG 2.1.1.14 GO:0000325 ... O50008 15326182
    6 1woo:A (2.4) BS01 THG 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    7 2yck:X (2.15) BS01 THG ? GO:0003674 ... Q3ACR9 21640123
    8 3bhl:A (1.4) BS02 THG 2.1.1.45 GO:0000287 ... P0A884 N/A
    9 3bhl:B (1.4) BS03 THG 2.1.1.45 GO:0000287 ... P0A884 N/A
    10 3bhr:A (1.9) BS01 THG 2.1.1.45 GO:0000287 ... P0A884 N/A
    11 3g5r:A (1.6) BS02 THG 2.1.1.74 GO:0002098 ... Q5SID2 19416846
    12 3gsi:A (2.0) BS01 THG 1.5.3.10 GO:0000166 ... Q9AGP8 19369258
    13 3tfj:A (1.6) BS01 THG 2.1.1.269 GO:0008168 ... Q4FP21 22162093
    14 3tfj:B (1.6) BS01 THG 2.1.1.269 GO:0008168 ... Q4FP21 22162093
    15 4ccz:A (2.7) BS01 THG 2.1.1.13 GO:0008270 ... Q99707 N/A
    16 4kum:A (3.05) BS02 THG 1.14.99.66 GO:0005634 ... O60341 24715612
    17 4o1f:A (1.8) BS01 THG ? GO:0005829 ... B8FW00 26327380
    18 4o1f:B (1.8) BS01 THG ? GO:0005829 ... B8FW00 26327380
    19 4paa:A (2.26) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    20 4paa:B (2.26) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    21 4pab:A (1.85) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    22 4pab:B (1.85) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    23 4qpd:A (2.1) BS01 THG 1.5.1.6 GO:0003824 ... E3NZ06 25849409 PDBbind: -logKd/Ki=7.82, Kd=15nM
    24 4qpd:B (2.1) BS01 THG 1.5.1.6 GO:0003824 ... E3NZ06 25849409
    25 4qpd:B (2.1) BS02 THG 1.5.1.6 GO:0003824 ... E3NZ06 25849409
    26 5t7o:A (1.8) BS02 THG 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q4DLS1 N/A
    27 5t7o:B (1.8) BS01 THG 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q4DLS1 N/A
    28 5t7o:C (1.8) BS01 THG 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q4DLS1 N/A
    29 5t7o:D (1.8) BS03 THG 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q4DLS1 N/A
    30 5x1l:B (1.9) BS01 THG 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    31 5x1l:C (1.9) BS01 THG 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    32 5x1m:B (1.9) BS01 THG 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    33 5x1m:C (1.9) BS01 THG 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    34 5x1n:A (2.0) BS01 THG 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    35 5x1n:B (2.0) BS01 THG 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    36 6a9a:A (1.9) BS02 THG 2.1.2.8 GO:0016740 ... P08773 30867918
    37 6cw7:A (1.03) BS01 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30564747
    38 6j1f:A (2.1) BS02 THG ? GO:0003824 ... O67224 31646188
    39 6j1j:A (2.0) BS02 THG ? GO:0003824 ... O67224 31646188
    40 6mr9:A (1.35) BS01 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    41 6mt8:A (1.35) BS01 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    42 6mth:A (1.35) BS01 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    43 6mth:A (1.35) BS02 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    44 7vg5:A (2.25) BS01 THG 3.5.4.9 GO:0003824 ... Q49135 35051495
    45 7vg5:B (2.25) BS01 THG 3.5.4.9 GO:0003824 ... Q49135 35051495
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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