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BioLiP Library
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lif:A (1.6) BS01 STE ? GO:0005324 ... P04117 8463311
    2 1uvc:A (2.0) BS01 STE ? GO:0006869 ... Q0IQK9 15295114
    3 1uvc:B (2.0) BS01 STE ? GO:0006869 ... Q0IQK9 15295114
    4 1xxs:A (1.8) BS01 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    5 1xxs:A (1.8) BS02 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    6 1xxs:A (1.8) BS03 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    7 1xxs:A (1.8) BS04 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    8 1xxs:B (1.8) BS01 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    9 1xxs:B (1.8) BS02 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    10 1xxs:B (1.8) BS03 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    11 1xxs:B (1.8) BS04 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    12 4fnn:A (2.24) BS01 STE ? GO:0001818 ... Q9GK12 23149273 PDBbind: -logKd/Ki=7.57, Kd=27.2nM
    13 4fnn:B (2.24) BS01 STE ? GO:0001818 ... Q9GK12 23149273 PDBbind: -logKd/Ki=7.57, Kd=27.2nM
    14 4fnn:D (2.24) BS01 STE ? GO:0001818 ... Q9GK12 23149273 PDBbind: -logKd/Ki=7.57, Kd=27.2nM
    15 4gf9:D (2.8) BS01 STE ? GO:0001818 ... Q9GK12 23326499
    16 4wbk:A (1.37) BS01 STE ? GO:0005515 ... P05413 25489786
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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