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BioLiP
Download all results in tab-seperated text for 726 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 6axm:A (1.8) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 28967743
    602 6axn:A (1.9) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 28967743
    603 6axu:A (1.822) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 28967743
    604 6b7a:B (1.991) BS02 POP 2.7.7.3 GO:0003824 ... P0A6I6 29190085
    605 6b7b:B (1.981) BS02 POP 2.7.7.3 GO:0003824 ... P0A6I6 29190085
    606 6b7c:A (1.564) BS02 POP 2.7.7.3 GO:0003824 ... P0A6I6 29190085
    607 6b7c:B (1.564) BS02 POP 2.7.7.3 GO:0003824 ... P0A6I6 29190085
    608 6b7f:A (2.562) BS01 POP 2.7.7.3 GO:0003824 ... P0A6I6 29190085
    609 6ctc:A (2.6) BS04 POP ? GO:0005515 ... P02787 30311019
    610 6d9m:A (1.35) BS04 POP 3.2.1.17 GO:0003796 ... P00720
    Q39UD1    		 30964001
    611 6dc6:A (3.14) BS02 POP 6.2.1.45 GO:0000792 ... P22314 30279270
    612 6dc6:C (3.14) BS02 POP 6.2.1.45 GO:0000792 ... P22314 30279270
    613 6e85:A (1.25) BS01 POP 1.1.1.262 GO:0016491 ... A0A1Y0PY16 36695589
    614 6f87:A (2.62) BS01 POP 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    615 6f87:B (2.62) BS01 POP 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    616 6f87:C (2.62) BS01 POP 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    617 6f87:D (2.62) BS01 POP 2.7.7.87 GO:0000049 ... Q9UYB2 29650678
    618 6hvh:A (2.36) BS02 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 30378281
    619 6hvi:A (1.96) BS02 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 30378281
    620 6ibx:A (2.11) BS02 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 30626557
    621 6iby:A (2.51) BS02 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 30626557
    622 6ic0:A (2.6) BS02 POP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 30626557
    623 6j3m:A (2.3) BS01 POP 2.7.7.3 GO:0003824 ... A0A059ZFC5 N/A
    624 6jaf:A (2.9) BS01 POP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    625 6lse:A (2.25) BS04 POP 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... E5RPG3 32451382
    626 6m65:A (1.44) BS02 POP 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 33021500
    627 6m69:A (1.5) BS02 POP 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 33021500
    628 6m6y:A (1.5) BS02 POP 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 33021500
    629 6m72:A (1.6) BS02 POP 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 33021500
    630 6o82:A (2.604) BS01 POP 6.2.1.45 GO:0000287 ... O94609 31235585
    631 6o82:A (2.604) BS02 POP 6.2.1.45 GO:0000287 ... O94609 31235585
    632 6o82:C (2.604) BS02 POP 6.2.1.45 GO:0000287 ... O94609 31235585
    633 6ofb:A (2.84) BS03 POP 6.3.5.1 GO:0003952 ... Q6IA69 31911602
    634 6ofb:B (2.84) BS04 POP 6.3.5.1 GO:0003952 ... Q6IA69 31911602
    635 6ofc:B (3.14) BS04 POP 6.3.5.1 GO:0003952 ... P9WJJ3 31911602
    636 6ofv:A (1.91) BS01 POP 4.2.3.37 GO:0016829 ... Q9K499 31152775
    637 6om4:A (1.7) BS04 POP ? GO:0004792 ... Q47506 30881667
    638 6om4:B (1.7) BS05 POP ? GO:0004792 ... Q47506 30881667
    639 6oqq:A (2.102) BS02 POP 6.-.-.- GO:0000166 ... Q5ZTK6 31123136
    640 6oqq:C (2.102) BS02 POP 6.-.-.- GO:0000166 ... Q5ZTK6 31123136
    641 6oqq:C (2.102) BS03 POP 6.-.-.- GO:0000166 ... Q5ZTK6 31123136
    642 6ovr:D (2.843) BS03 POP 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    643 6ow3:D (2.766) BS04 POP 2.7.7.6 GO:0000287 ... Q8RQE8 31965171
    644 6p9v:A (2.051) BS02 POP 2.5.1.6 GO:0004478 ... P31153 32091873
    645 6plm:A (2.592) BS03 POP 6.-.-.- N/A Q5ZTK6 31682223
    646 6plm:B (2.592) BS03 POP 6.-.-.- N/A Q5ZTK6 31682223
    647 6pyp:B (1.95) BS01 POP 1.1.1.8 GO:0004368 ... P21695 33042609
    648 6qcx:B (3.08) BS04 POP 2.7.7.48 GO:0000166 ... Q5V8Y6 31160782
    649 6szu:B (2.41) BS05 POP 2.7.7.48 GO:0000166 ... H6QM91 32304664
    650 6tw1:B (2.7) BS05 POP 2.7.7.48 GO:0000166 ... H6QM91 32304664
    651 6vtf:A (2.71) BS01 POP ? GO:0005524 ... D2W2Z5 32315072
    652 6vtf:B (2.71) BS01 POP ? GO:0005524 ... D2W2Z5 32315072
    653 6vtf:C (2.71) BS01 POP ? GO:0005524 ... D2W2Z5 32315072
    654 6vtf:D (2.71) BS01 POP ? GO:0005524 ... D2W2Z5 32315072
    655 6vyd:A (1.46) BS04 POP ? GO:0046872 ... I1RDR8 32769971
    656 6vyd:B (1.46) BS04 POP ? GO:0046872 ... I1RDR8 32769971
    657 6w26:A (2.15) BS04 POP ? GO:0046872 ... I1RDR8 32769971
    658 6w26:I (2.15) BS04 POP ? GO:0046872 ... I1RDR8 32769971
    659 6x3b:B (1.91) BS02 POP 1.1.1.281 GO:0009103 ... Q9HTB6 N/A
    660 6x71:A (1.78) BS07 POP 2.7.7.- GO:0003684 ... P12689 32999062
    661 7aap:A (2.5) BS07 POP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33526596
    662 7c6k:A (1.77) BS04 POP ? GO:0015768 ... Q53W80 32866452
    663 7dfg:A (2.7) BS07 POP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    664 7dfh:A (2.97) BS04 POP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    665 7doi:A (2.6) BS05 POP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    666 7doi:A (2.6) BS06 POP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    667 7dok:A (2.73) BS06 POP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    668 7dok:A (2.73) BS08 POP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    669 7kjg:A (1.3) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 33270439
    670 7lo2:A (1.89) BS01 POP N/A GO:0004478 ... N/A 34977903
    671 7lo2:B (1.89) BS01 POP N/A GO:0004478 ... N/A 34977903
    672 7lo2:C (1.89) BS01 POP N/A GO:0004478 ... N/A 34977903
    673 7lo2:D (1.89) BS01 POP N/A GO:0004478 ... N/A 34977903
    674 7loo:A (1.95) BS01 POP N/A GO:0004478 ... N/A 34977903
    675 7loo:A (1.95) BS04 POP N/A GO:0004478 ... N/A 34977903
    676 7loo:B (1.95) BS01 POP N/A GO:0004478 ... N/A 34977903
    677 7loo:B (1.95) BS03 POP N/A GO:0004478 ... N/A 34977903
    678 7loo:Q (1.95) BS01 POP N/A GO:0004478 ... N/A 34977903
    679 7loo:Q (1.95) BS03 POP N/A GO:0004478 ... N/A 34977903
    680 7loo:R (1.95) BS01 POP N/A GO:0004478 ... N/A 34977903
    681 7loo:R (1.95) BS03 POP N/A GO:0004478 ... N/A 34977903
    682 7low:A (2.39) BS01 POP N/A GO:0004478 ... N/A 34977903
    683 7low:B (2.39) BS01 POP N/A GO:0004478 ... N/A 34977903
    684 7loz:A (2.25) BS01 POP N/A GO:0004478 ... N/A 34977903
    685 7loz:B (2.25) BS01 POP N/A GO:0004478 ... N/A 34977903
    686 7nsa:A (1.95) BS02 POP ? GO:0005524 ... Q4JAT2 34029589
    687 7oa2:A (2.7) BS01 POP ? GO:0005524 ... Q4JAT2 34029589
    688 7oma:A (3.1) BS03 POP ? N/A Q6A562 34203380
    689 7oma:B (3.1) BS03 POP ? N/A Q6A562 34203380
    690 7oma:C (3.1) BS03 POP ? N/A Q6A562 34203380
    691 7ori:A (3.9) BS06 POP 2.7.7.48
    3.1.-.-    		 GO:0003968 ... A5HC98 35173159
    692 7orl:A (3.6) BS05 POP 2.7.7.48
    3.1.-.-    		 GO:0003968 ... A5HC98 35173159
    693 7r7e:A (1.99) BS02 POP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    694 7r7e:B (1.99) BS02 POP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    695 7r7f:A (2.13) BS01 POP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    696 7r7f:B (2.13) BS01 POP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    697 7r7g:A (2.25) BS02 POP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    698 7r7g:B (2.25) BS02 POP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    699 7s2k:A (1.74) BS02 POP 2.5.1.15 GO:0004156 ... P0AC11 37419898
    700 7tux:A (1.62) BS02 POP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 36413975
    701 7tux:B (1.62) BS02 POP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 36413975
    702 7tux:C (1.62) BS02 POP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 36413975
    703 7tux:D (1.62) BS02 POP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 36413975
    704 7vqc:B (2.45) BS01 POP ? GO:0016094 ... Q8TPS4 35764165
    705 7w5j:A (2.05) BS02 POP 4.2.3.-
    4.2.3.104
    4.2.3.137
    4.2.3.157
    4.2.3.182
    4.2.3.57    		 GO:0016829 ... A0A5S9I252 35504416
    706 7wgh:A (2.36) BS01 POP 2.5.1.21 GO:0004310 ... A0A364LX79 35811857
    707 7y9g:A (2.18) BS01 POP N/A N/A N/A 37414771
    708 7y9g:B (2.18) BS01 POP N/A N/A N/A 37414771
    709 8a78:A (1.6) BS03 POP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    710 8d5i:B (1.82) BS01 POP N/A GO:0004156 ... N/A N/A
    711 8h6u:A (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    712 8h6u:B (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    713 8h6u:C (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    714 8h6u:D (2.78) BS03 POP 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    715 8jzg:A (2.39) BS04 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    716 8jzg:B (2.39) BS02 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    717 8jzg:C (2.39) BS01 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    718 8jzg:D (2.39) BS02 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    719 8r3k:B (3.43) BS03 POP 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    720 8scd:A (2.06) BS03 POP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    721 8su3:A (1.29) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    722 8su4:A (1.43) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    723 8su5:A (1.48) BS03 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    724 8uku:B (3.6) BS04 POP 2.7.7.6 GO:0000428 ... P08518 38393762
    725 9b5h:A (2.69) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    726 9b5i:A (2.7) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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