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BioLiP Library
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1iye:A (1.82) BS01 PGU 2.6.1.42 GO:0003824 ... P0AB80 12667063
    2 1iye:B (1.82) BS01 PGU 2.6.1.42 GO:0003824 ... P0AB80 12667063
    3 1iye:C (1.82) BS01 PGU 2.6.1.42 GO:0003824 ... P0AB80 12667063
    4 1maq:A (2.3) BS01 PGU 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 7903048
    5 1x28:A (2.4) BS01 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    6 1x28:A (2.4) BS02 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    7 1x28:B (2.4) BS01 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    8 1x28:B (2.4) BS02 PGU 2.6.1.1 GO:0003824 ... P00509 15938611
    9 2oga:A (2.05) BS01 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    10 2oga:A (2.05) BS02 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    11 2oga:B (2.05) BS01 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    12 2oga:B (2.05) BS02 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    13 2oga:C (2.05) BS01 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    14 2oga:C (2.05) BS02 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    15 2oga:D (2.05) BS01 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    16 2oga:D (2.05) BS02 PGU 2.6.1.106 GO:0000271 ... Q9ZGH4 17456741
    17 2r0t:A (1.9) BS01 PGU 2.6.1.- GO:0000271 ... Q9F118 17997582
    18 2r0t:A (1.9) BS02 PGU 2.6.1.- GO:0000271 ... Q9F118 17997582
    19 2r0t:B (1.9) BS01 PGU 2.6.1.- GO:0000271 ... Q9F118 17997582
    20 2r0t:B (1.9) BS02 PGU 2.6.1.- GO:0000271 ... Q9F118 17997582
    21 2zyj:A (1.67) BS01 PGU 2.6.1.39 GO:0008483 ... Q72LL6 19632206
    22 2zyj:B (1.67) BS01 PGU 2.6.1.39 GO:0008483 ... Q72LL6 19632206
    23 3ei5:A (2.05) BS01 PGU 2.6.1.83 GO:0005507 ... Q93ZN9 18952095
    24 3ei5:A (2.05) BS02 PGU 2.6.1.83 GO:0005507 ... Q93ZN9 18952095
    25 3ei5:B (2.05) BS01 PGU 2.6.1.83 GO:0005507 ... Q93ZN9 18952095
    26 3ei5:B (2.05) BS02 PGU 2.6.1.83 GO:0005507 ... Q93ZN9 18952095
    27 7vo1:A (2.99) BS01 PGU 2.6.1.13 GO:0008483 ... O50131 35337912
    28 7vo1:A (2.99) BS02 PGU 2.6.1.13 GO:0008483 ... O50131 35337912
    29 7vo1:B (2.99) BS01 PGU 2.6.1.13 GO:0008483 ... O50131 35337912
    30 7vo1:B (2.99) BS02 PGU 2.6.1.13 GO:0008483 ... O50131 35337912
    31 8xha:A (2.27) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    32 8xha:B (2.27) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    33 8xhd:A (2.7) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    34 8xhd:B (2.7) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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