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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fiw:A (2.1) BS03 PBZ 3.4.21.10 GO:0004040 ... Q9GL10 11080640
    2 1fiw:A (2.1) BS04 PBZ 3.4.21.10 GO:0004040 ... Q9GL10 11080640
    3 1fiz:A (2.9) BS02 PBZ 3.4.21.10 GO:0004252 ... P08001 11080640
    4 1rfn:A (2.8) BS02 PBZ 3.4.21.22 GO:0004252 ... P00740 10467148
    5 2a2q:H (1.8) BS02 PBZ 3.4.21.21 GO:0004252 ... P08709 16757484
    6 2bdg:A (1.95) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    7 2bdg:B (1.95) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    8 2bdh:A (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    9 2bdh:B (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    10 2bdh:C (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    11 2bdh:D (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    12 2bdi:A (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    13 2bdi:B (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    14 2bdi:C (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    15 2bdi:D (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    16 2bdi:E (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    17 2bdi:F (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    18 2bdi:G (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    19 2bdi:H (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    20 2bdi:I (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    21 2bdi:J (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    22 2bdi:K (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    23 2bdi:L (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    24 2bdi:M (3.0) BS02 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    25 2bdi:N (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    26 2bdi:O (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    27 2bdi:P (3.0) BS01 PBZ 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    28 3gy4:A (1.55) BS02 PBZ 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=8uM
    PDBbind: -logKd/Ki=5.10, Kd=8uM
    29 5lhp:A (2.63) BS01 PBZ 3.4.21.73 GO:0004252 ... P06869 28611361
    30 6mv4:H (1.37) BS04 PBZ 3.4.21.22 GO:0004252 ... P00740 30725510
    31 7vxx:D (1.9) BS01 PBZ 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 36049322
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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