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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 170 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aom:B (1.8) BS03 NO 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    2 1blz:A (1.45) BS03 NO 1.21.3.1 GO:0005506 ... P05326 9194566
    3 1buw:A (1.9) BS02 NO ? GO:0004601 ... P69905 9843411
    4 1buw:B (1.9) BS02 NO ? GO:0004601 ... P68871 9843411
    5 1buw:C (1.9) BS02 NO ? GO:0004601 ... P69905 9843411
    6 1buw:D (1.9) BS02 NO ? GO:0004601 ... P68871 9843411
    7 1cl6:A (1.7) BS02 NO 1.7.1.14 GO:0004497 ... P23295 10671516
    8 1d6y:A (2.4) BS05 NO 1.4.3.21 GO:0005507 ... P46883 10576737
    9 1d6y:B (2.4) BS05 NO 1.4.3.21 GO:0005507 ... P46883 10576737
    10 1dw2:A (2.2) BS02 NO ? GO:0009055 ... P81238 10821858
    11 1dw2:B (2.2) BS02 NO ? GO:0009055 ... P81238 10821858
    12 1dw2:C (2.2) BS02 NO ? GO:0009055 ... P81238 10821858
    13 1f24:A (1.4) BS02 NO 1.7.1.14 GO:0004497 ... P23295 11132616
    14 1f26:A (1.4) BS02 NO 1.7.1.14 GO:0004497 ... P23295 11132616
    15 1hjt:A (1.7) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 9533619
    16 1j02:A (1.7) BS02 NO 1.14.14.18 GO:0001525 ... P06762 12924938
    17 1jdo:A (1.9) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 9533619
    18 1kw8:B (2.0) BS02 NO 1.13.11.39 GO:0003824 ... P17297 12206778
    19 1npf:A (1.9) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 14517970
    20 1rps:A (2.11) BS02 NO ? GO:0004601 ... P69905 14705937
    21 1rps:B (2.11) BS02 NO ? GO:0004601 ... P68871 14705937
    22 1rps:D (2.11) BS02 NO ? GO:0004601 ... P68871 14705937
    23 1rq4:A (2.11) BS02 NO ? GO:0004601 ... P69905 14705937
    24 1rq4:B (2.11) BS02 NO ? GO:0004601 ... P68871 14705937
    25 1rq4:C (2.11) BS02 NO ? GO:0004601 ... P69905 14705937
    26 1rq4:D (2.11) BS02 NO ? GO:0004601 ... P68871 14705937
    27 1rqa:A (2.11) BS02 NO ? GO:0004601 ... P69905 14705937
    28 1rqa:B (2.11) BS02 NO ? GO:0004601 ... P68871 14705937
    29 1rqa:D (2.11) BS02 NO ? GO:0004601 ... P68871 14705937
    30 1sdq:A (1.69) BS02 NO 1.11.1.5 GO:0004601 ... P00431 N/A
    31 1snr:A (1.31) BS03 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    32 1snr:A (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    33 1snr:B (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    34 1snr:B (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    35 1snr:C (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    36 1snr:C (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    37 1sy1:A (1.01) BS02 NO 1.7.6.1 GO:0005576 ... Q94734 15157102
    38 1twr:B (2.1) BS02 NO 1.14.14.18 GO:0004392 ... P09601 15522396
    39 1uuv:A (1.65) BS03 NO 1.14.12.12 GO:0005506 ... P0A110 15942729
    40 1wox:A (2.1) BS02 NO 1.14.14.18 GO:0004392 ... P74133 15766254
    41 1wox:B (2.1) BS02 NO 1.14.14.18 GO:0004392 ... P74133 15766254
    42 1x8o:A (1.01) BS02 NO 1.7.6.1 GO:0005576 ... Q94734 15504026
    43 1y21:A (1.75) BS01 NO ? GO:0004439 ... O76745 15637157
    44 1yfx:A (2.0) BS03 NO 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    45 1zgn:A (2.1) BS02 NO 2.5.1.18 GO:0000302 ... P09211 16195232
    46 1zgn:B (2.1) BS02 NO 2.5.1.18 GO:0000302 ... P09211 16195232
    47 2ahj:A (1.7) BS02 NO 4.2.1.84 GO:0003824 ... P13448 9586994
    48 2ahj:C (1.7) BS02 NO 4.2.1.84 GO:0003824 ... P13448 9586994
    49 2cz6:A (1.5) BS02 NO 4.2.1.84 GO:0003824 ... P13448 N/A
    50 2cz7:A (1.8) BS02 NO 4.2.1.84 GO:0003824 ... P13448 N/A
    51 2fc2:B (2.2) BS02 NO 1.14.14.47 GO:0004517 ... O34453 16489746
    52 2frj:X (1.3) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 16777231
    53 2frk:X (1.3) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 16777231
    54 2ghh:X (2.013) BS02 NO 1.11.1.11 GO:0004601 ... Q43758 16762924
    55 2nx0:A (0.95) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68190 17488722
    56 2o5q:X (1.9) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 17905436
    57 2ppd:A (1.8) BS03 NO 1.7.2.1 GO:0005507 ... P38501 17924665
    58 2ppd:B (1.8) BS01 NO 1.7.2.1 GO:0005507 ... P38501 17924665
    59 2ppd:B (1.8) BS04 NO 1.7.2.1 GO:0005507 ... P38501 17924665
    60 2ppd:C (1.8) BS01 NO 1.7.2.1 GO:0005507 ... P38501 17924665
    61 2ppe:C (1.75) BS01 NO 1.7.2.1 GO:0005507 ... P38501 17924665
    62 2ppf:C (1.65) BS04 NO 1.7.2.1 GO:0005507 ... P38501 17924665
    63 2xl6:A (1.07) BS02 NO ? GO:0005506 ... P00138 21073879
    64 2xlo:A (1.24) BS02 NO ? GO:0005506 ... P00138 21073879
    65 2xwz:B (2.34) BS04 NO 1.7.2.1 GO:0005507 ... O68601 21469743
    66 2xwz:C (2.34) BS03 NO 1.7.2.1 GO:0005507 ... O68601 21469743
    67 2xwz:D (2.34) BS04 NO 1.7.2.1 GO:0005507 ... O68601 21469743
    68 2xwz:E (2.34) BS04 NO 1.7.2.1 GO:0005507 ... O68601 21469743
    69 2y1a:A (1.95) BS03 NO 1.7.2.1 GO:0005507 ... P25006 21215826
    70 2ybm:A (2.0) BS01 NO 3.2.1.17 GO:0003796 ... P00698 21525642
    71 2zpb:A (1.3) BS02 NO 4.2.1.84 GO:0003824 ... P13448 18948265
    72 2zpe:A (1.48) BS02 NO 4.2.1.84 GO:0003824 ... P13448 18948265
    73 2zpf:A (1.482) BS02 NO 4.2.1.84 GO:0003824 ... P13448 18948265
    74 3a8g:A (1.11) BS02 NO 4.2.1.84 GO:0003824 ... P13448 20221653
    75 3abk:A (2.0) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20208153
    76 3abk:N (2.0) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20208153
    77 3ag3:A (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    78 3ag3:N (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    79 3nqs:B (2.2) BS03 NO 1.14.13.39 GO:0004517 ... P29477 20659888
    80 3pxw:A (2.11) BS01 NO 1.-.-.- GO:0004130 ... Q51658 21355604
    81 3pxw:B (2.11) BS01 NO 1.-.-.- GO:0004130 ... Q51658 21355604
    82 3rgp:A (1.88) BS02 NO 1.11.1.6 GO:0004096 ... P00432 21524057
    83 3rgp:B (1.88) BS02 NO 1.11.1.6 GO:0004096 ... P00432 21524057
    84 3rgp:C (1.88) BS02 NO 1.11.1.6 GO:0004096 ... P00432 21524057
    85 3rgp:D (1.88) BS02 NO 1.11.1.6 GO:0004096 ... P00432 21524057
    86 3scf:A (2.85) BS02 NO 1.11.1.23 GO:0003677 ... Q56185 21682308
    87 3scf:B (2.85) BS02 NO 1.11.1.23 GO:0003677 ... Q56185 21682308
    88 3wve:A (1.57) BS02 NO 4.2.1.84 GO:0003824 ... P13448 26333053
    89 4b7f:A (1.76) BS02 NO N/A GO:0004096 ... N/A 24121528
    90 4b7f:B (1.76) BS02 NO N/A GO:0004096 ... N/A 24121528
    91 4b7f:C (1.76) BS02 NO N/A GO:0004096 ... N/A 24121528
    92 4b7f:D (1.76) BS02 NO N/A GO:0004096 ... N/A 24121528
    93 4b7h:A (1.39) BS02 NO N/A GO:0004096 ... N/A 24121528
    94 4b7h:B (1.39) BS03 NO N/A GO:0004096 ... N/A 24121528
    95 4b7h:C (1.39) BS03 NO N/A GO:0004096 ... N/A 24121528
    96 4b7h:D (1.39) BS03 NO N/A GO:0004096 ... N/A 24121528
    97 4d4n:A (1.45) BS02 NO ? GO:0005506 ... P00138 26100643
    98 4d4x:A (1.3) BS02 NO ? GO:0005506 ... P00138 26100643
    99 4g51:B (2.5) BS01 NO ? GO:0004601 ... P80044 23275172
    100 4g51:D (2.5) BS01 NO ? GO:0004601 ... P80044 23275172
    101 4n8t:A (1.9) BS02 NO ? GO:0004601 ... P69905 24769418
    102 4n8t:B (1.9) BS02 NO ? GO:0004601 ... P68871 24769418
    103 4u9k:A (2.45) BS03 NO ? GO:0003674 ... Q8EF49 25253889
    104 4yof:A (1.9) BS02 NO 2.7.13.3 N/A P9WGK3 25670859
    105 4z1v:A (2.1) BS01 NO 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 26727884
    106 5e29:A (1.85) BS01 NO ? GO:0004601 ... P69905 26582149
    107 5e29:C (1.85) BS04 NO ? GO:0004601 ... P69905 26582149
    108 5i6m:A (1.09) BS04 NO 1.7.2.1 GO:0005507 ... P25006 27437114
    109 5i6n:A (1.22) BS03 NO 1.7.2.1 GO:0005507 ... P25006 27437114
    110 5jrv:A (1.953) BS02 NO ? GO:0020037 ... Q8RBX6 27328180
    111 5jrv:B (1.953) BS02 NO ? GO:0020037 ... Q8RBX6 27328180
    112 5jua:A (1.13) BS02 NO ? GO:0005506 ... P00138 28451315
    113 5lti:A (1.9) BS02 NO ? GO:0046872 ... A4XXY9 27851736
    114 5of6:A (1.08) BS07 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    115 5of7:A (1.27) BS05 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    116 5of7:A (1.27) BS06 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    117 5of7:A (1.27) BS07 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    118 5of8:A (1.34) BS04 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    119 5of8:A (1.34) BS05 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    120 5ofd:A (1.77) BS03 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    121 5ofe:A (1.84) BS03 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    122 5og3:A (1.7) BS09 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    123 5og6:A (1.85) BS08 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    124 5vzn:A (1.7) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 29999305
    125 5vzp:A (1.78) BS02 NO 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 29999305
    126 5y5f:A (1.5) BS02 NO 1.7.1.14 GO:0004497 ... P23295 29147002
    127 5y5g:A (1.36) BS02 NO 1.7.1.14 GO:0004497 ... P23295 29147002
    128 6bpr:A (1.96) BS03 NO 1.13.11.20 GO:0000097 ... Q16878 30946568
    129 6dyk:A (1.955) BS02 NO ? GO:0005506 ... P0ABE7 30778140
    130 6dyk:C (1.955) BS02 NO ? GO:0005506 ... P0ABE7 30778140
    131 6dyk:E (1.955) BS02 NO ? GO:0005506 ... P0ABE7 30778140
    132 6dyk:G (1.955) BS02 NO ? GO:0005506 ... P0ABE7 30778140
    133 6j87:A (2.3) BS02 NO ? GO:0004497 ... A0A1M4Y7D5 31636430
    134 6j87:B (2.3) BS02 NO ? GO:0004497 ... A0A1M4Y7D5 31636430
    135 6n43:A (2.289) BS03 NO 1.13.11.20 GO:0000097 ... Q16878 30946568
    136 6tfd:B (2.25) BS05 NO 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    137 6xtn:A (1.4) BS04 NO 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    138 6xto:A (1.4) BS05 NO 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    139 6zan:A (1.35) BS03 NO 1.21.3.1 GO:0005506 ... P05326 34417180
    140 6zau:A (1.3) BS05 NO 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    141 6zau:A (1.3) BS06 NO 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    142 6zav:A (1.19) BS07 NO 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    143 6zav:A (1.19) BS08 NO 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    144 6zaw:A (1.3) BS06 NO 1.7.2.1 GO:0005507 ... H0SLX7 33523860
    145 6zua:A (1.14) BS04 NO 1.7.2.1 GO:0005507 ... P25006 34094452
    146 6zut:A (1.15) BS03 NO 1.7.2.1 GO:0005507 ... P25006 34094452
    147 7poy:A (1.75) BS03 NO 1.21.3.1 GO:0005506 ... P05326 35835215
    148 7y3u:A (2.5) BS03 NO 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    149 7y3u:B (2.5) BS03 NO 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    150 7zco:A (1.22) BS04 NO 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    151 7zcp:A (1.29) BS04 NO 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    152 7zcq:A (1.35) BS04 NO 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    153 7zps:A (1.56) BS02 NO ? GO:0046872 ... G1UBD5 37100286
    154 7zps:B (1.56) BS02 NO ? GO:0046872 ... G1UBD5 37100286
    155 8ijn:A (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    156 8ijn:N (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    157 8ing:A (1.98) BS01 NO 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    158 8rfp:A (1.23) BS06 NO N/A GO:0016491 ... Q89EJ6 39002715
    159 8rfq:A (1.32) BS05 NO N/A GO:0016491 ... Q89EJ6 39002715
    160 8rfr:A (1.4) BS05 NO N/A GO:0016491 ... Q89EJ6 39002715
    161 8rg8:A (1.21) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    162 8rg9:A (1.25) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    163 8rgb:A (1.39) BS09 NO N/A GO:0016491 ... H0SLX7 39002715
    164 8rgb:A (1.39) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    165 8rgc:A (1.55) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    166 8rgd:A (1.71) BS09 NO N/A GO:0016491 ... H0SLX7 39002715
    167 8rgd:A (1.71) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    168 8ryu:A (1.45) BS04 NO N/A N/A Q89EJ6 39002715
    169 8ryv:A (1.45) BS04 NO N/A N/A Q89EJ6 39002715
    170 9it8:A (1.954) BS01 NO N/A N/A P80025 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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