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BioLiP Library
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1f42:A (2.5) BS01 MNB ? GO:0001817 ... P29460 10899108
    2 1rxe:A (1.7) BS01 MNB 1.20.4.4 GO:0004725 ... P0A006 15159594
    3 2per:A (2.0) BS01 MNB ? GO:0004364 ... O15247 18186468
    4 3qvo:A (2.3) BS01 MNB N/A N/A N/A N/A
    5 3urg:A (2.003) BS01 MNB ? N/A Q8YY42 23143261
    6 4f42:A (2.38) BS01 MNB ? GO:0007165 ... P07174 N/A
    7 4f42:A (2.38) BS02 MNB ? GO:0007165 ... P07174 N/A
    8 4f44:A (2.4) BS01 MNB ? GO:0007165 ... P07174 N/A
    9 4f44:B (2.4) BS01 MNB ? GO:0007165 ... P07174 N/A
    10 5lb1:A (1.55) BS01 MNB 2.3.2.- GO:0016740 ... I6Y9J2 28075068
    11 5lb1:B (1.55) BS01 MNB 2.3.2.- GO:0016740 ... I6Y9J2 28075068
    12 5w2r:A (2.9) BS01 MNB ? N/A Q0PB90 29232505
    13 5w2z:A (2.8) BS01 MNB ? N/A Q0PB90 29232505
    14 5w3a:A (2.76) BS01 MNB ? N/A Q0PB90 29232505
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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