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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2drd:A (3.1) BS01 MIY ? GO:0005515 ... P31224 16915237
    2 2wq5:A (1.65) BS01 MIY 3.1.1.4 GO:0004623 ... P15445 20211188 MOAD: Kd=180uM
    PDBbind: -logKd/Ki=3.74, Kd=180uM
    3 2xpv:A (1.49) BS01 MIY ? GO:0000976 ... P0ACT4 N/A
    4 3aod:A (3.3) BS01 MIY ? GO:0005515 ... P31224 22121023
    5 3v3n:A (2.703) BS01 MIY 1.14.13.231 GO:0000166 ... Q93L51 N/A
    6 3v3n:B (2.703) BS01 MIY 1.14.13.231 GO:0000166 ... Q93L51 N/A
    7 3v3n:C (2.703) BS01 MIY 1.14.13.231 GO:0000166 ... Q93L51 N/A
    8 3v3n:D (2.703) BS01 MIY 1.14.13.231 GO:0000166 ... Q93L51 N/A
    9 4a99:A (2.18) BS02 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    10 4a99:A (2.18) BS03 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    11 4a99:A (2.18) BS04 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    12 4a99:B (2.18) BS02 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    13 4a99:C (2.18) BS01 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    14 4a99:C (2.18) BS03 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    15 4a99:C (2.18) BS04 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    16 4a99:D (2.18) BS02 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    17 4a99:D (2.18) BS03 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    18 4a99:D (2.18) BS04 MIY 1.14.13.231 GO:0000166 ... Q93L51 23999299
    19 4ac0:A (2.45) BS01 MIY ? GO:0000976 ... P04483 N/A
    20 4dx5:B (1.9) BS01 MIY ? GO:0005515 ... P31224 22451937
    21 4u8v:B (2.298) BS01 MIY ? GO:0005515 ... P31224 25248080
    22 4u8y:B (2.099) BS01 MIY ? GO:0005515 ... P31224 25248080
    23 4u95:B (2.0) BS01 MIY ? GO:0005515 ... P31224 25248080
    24 5ent:C (2.5) BS01 MIY ? GO:0016020 ... P31224 26976576
    25 6qjx:A (2.1) BS01 MIY ? GO:0000976 ... P0ACT4 32114262
    26 6rbm:A (2.05) BS01 MIY ? GO:0000976 ... P0ACT4 32114262
    27 6rxb:A (2.25) BS01 MIY N/A GO:0003677 ... N/A N/A
    28 6rxb:B (2.25) BS01 MIY N/A GO:0003677 ... N/A N/A
    29 6rxb:C (2.25) BS01 MIY N/A GO:0003677 ... N/A N/A
    30 6rxb:D (2.25) BS01 MIY N/A GO:0003677 ... N/A N/A
    31 6zo6:B (2.35) BS01 MIY ? GO:0005515 ... P31224 34188038
    32 6zo8:B (2.5) BS01 MIY ? GO:0005515 ... P31224 34188038
    33 6zog:B (2.75) BS01 MIY ? GO:0005515 ... P31224 34188038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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