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BioLiP Library
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ix1:A (1.85) BS03 MHA 3.5.1.88 GO:0006412 ... Q9I7A8 15382235
    2 1ix1:B (1.85) BS03 MHA 3.5.1.88 GO:0006412 ... Q9I7A8 15382235
    3 4bvn:A (2.1) BS02 MHA ? GO:0004930 ... P07700 24663151
    4 4gz7:A (2.0) BS01 MHA ? GO:0004157 ... H3C542 N/A
    5 4gz7:A (2.0) BS02 MHA ? GO:0004157 ... H3C542 N/A
    6 4gz7:A (2.0) BS03 MHA ? GO:0004157 ... H3C542 N/A
    7 5a8e:A (2.4) BS02 MHA ? GO:0004930 ... P07700 26385885
    8 5hwe:A (1.71) BS02 MHA 3.5.2.1 GO:0006212 ... Q8RSQ2 28235873
    9 5hxu:A (1.83) BS01 MHA 3.5.2.1 GO:0006212 ... Q8RSQ2 28235873
    10 5hxu:B (1.83) BS01 MHA 3.5.2.1 GO:0006212 ... Q8RSQ2 28235873
    11 5hxz:A (2.36) BS01 MHA 3.5.2.1 GO:0006212 ... Q8RSQ2 28235873
    12 5hxz:D (2.36) BS01 MHA 3.5.2.1 GO:0006212 ... Q8RSQ2 28235873
    13 5sw1:A (1.1) BS01 MHA ? GO:0005576 ... P02883 N/A
    14 5wjh:A (1.63) BS02 MHA 3.4.21.64 GO:0004252 ... P06873 30289409
    15 6ajf:A (2.698) BS01 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    16 6ajf:A (2.698) BS02 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    17 6ajg:A (2.604) BS02 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    18 6ajg:A (2.604) BS03 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    19 6ajh:A (2.818) BS07 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    20 6ajh:A (2.818) BS08 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    21 6ajh:A (2.818) BS09 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    22 6aji:A (2.9) BS05 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    23 6aji:A (2.9) BS06 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    24 6ajj:A (2.794) BS01 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    25 6ajj:A (2.794) BS02 MHA 3.2.1.17 GO:0003796 ... A0QP27
    D9IEF7    		 30682372
    26 6d0j:C (3.0) BS01 MHA N/A N/A N/A 29941917
    27 6d0k:C (3.35) BS01 MHA N/A N/A N/A 29941917
    28 6d0n:C (3.12) BS01 MHA N/A N/A N/A 29941917
    29 6qlm:B (1.5) BS02 MHA 3.4.22.38 GO:0006508 ... P43235 N/A
    30 6qm0:A (1.9) BS01 MHA 3.4.22.38 GO:0006508 ... P43235 N/A
    31 7ad7:B (2.3) BS01 MHA ? GO:0004866 ... P01031 33570492
    32 7c2m:A (3.1) BS06 MHA 3.2.1.17 GO:0003796 ... A0QP27 32512002
    33 7c2m:A (3.1) BS07 MHA 3.2.1.17 GO:0003796 ... A0QP27 32512002
    34 7c2n:A (2.82) BS06 MHA 3.2.1.17 GO:0003796 ... A0QP27 32512002
    35 7c2n:A (2.82) BS07 MHA 3.2.1.17 GO:0003796 ... A0QP27 32512002
    36 7p8s:A (1.9) BS01 MHA ? GO:0005576 ... Q2FXB0 35311641
    37 8dhk:A (2.3) BS02 MHA 1.8.5.8 GO:0005515 ... Q9Y6N5 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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