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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2jn3:A (-1.00) BS01 JN3 ? GO:0005504 ... P80226 17929837
    2 2jn3:A (-1.00) BS02 JN3 ? GO:0005504 ... P80226 17929837
    3 3o02:A (1.9) BS01 JN3 ? N/A Q56026 21031487
    4 3o02:B (1.9) BS01 JN3 ? N/A Q56026 21031487
    5 6hl1:A (1.599) BS02 JN3 ? GO:0003677 ... Q96RI1 31266946 BindingDB: EC50=8660nM
    6 6ie9:A (1.78) BS01 JN3 ? GO:0000976 ... A0A0F6AY66 30655545 MOAD: Kd=65.3uM
    7 7svg:A (1.35) BS01 JN3 3.5.1.-
    3.5.1.24
    3.5.1.74    		 GO:0006629 ... A0A805Z5R7 36914755
    8 7svg:A (1.35) BS02 JN3 3.5.1.-
    3.5.1.24
    3.5.1.74    		 GO:0006629 ... A0A805Z5R7 36914755
    9 7svg:D (1.35) BS01 JN3 3.5.1.-
    3.5.1.24
    3.5.1.74    		 GO:0006629 ... A0A805Z5R7 36914755
    10 8dml:B (2.08) BS01 JN3 ? N/A Q87GI3 36894018
    11 8dml:D (2.08) BS01 JN3 ? N/A Q87GI3 36894018
    12 8dml:F (2.08) BS01 JN3 ? N/A Q87GI3 36894018
    13 8dml:H (2.08) BS01 JN3 ? N/A Q87GI3 36894018
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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