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BioLiP Library
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6duk:A (2.2) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 31092401 PDBbind: -logKd/Ki=9.59, IC50=0.26nM
    BindingDB: IC50=>1000nM
    2 6duk:B (2.2) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 31092401 BindingDB: IC50=>1000nM
    3 6duk:C (2.2) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 31092401 BindingDB: IC50=>1000nM
    4 6duk:D (2.2) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 31092401 BindingDB: IC50=>1000nM
    5 6duk:E (2.2) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 31092401 BindingDB: IC50=>1000nM
    6 6duk:F (2.2) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 31092401 BindingDB: IC50=>1000nM
    7 7jxk:A (3.1) BS02 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    8 7jxk:C (3.1) BS02 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    9 7jxk:D (3.1) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    10 7jxk:E (3.1) BS02 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    11 7jxk:F (3.1) BS02 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    12 7jxp:A (2.16) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    13 7jxp:B (2.16) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    14 7jxp:C (2.16) BS01 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    15 7jxp:D (2.16) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    16 7jxp:E (2.16) BS01 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    17 7jxp:F (2.16) BS03 JBJ 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=>1000nM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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