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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2cv2:A (2.69) BS02 GSU 6.1.1.17 GO:0000049 ... P27000 17161369
    2 2cv2:B (2.69) BS02 GSU 6.1.1.17 GO:0000049 ... P27000 17161369
    3 2re8:A (2.6) BS02 GSU 6.1.1.18 GO:0000166 ... P00962 18477696
    4 3afh:A (2.0) BS01 GSU 6.1.1.17 GO:0000049 ... Q9X2I8 20606262
    5 3akz:A (2.9) BS02 GSU 6.1.1.17 GO:0000049 ... Q9X2I8 20882017
    6 3akz:B (2.9) BS02 GSU 6.1.1.17 GO:0000049 ... Q9X2I8 20882017
    7 3akz:C (2.9) BS02 GSU 6.1.1.17 GO:0000049 ... Q9X2I8 20882017
    8 3akz:D (2.9) BS02 GSU 6.1.1.17 GO:0000049 ... Q9X2I8 20882017
    9 3al0:C (3.368) BS02 GSU 6.1.1.17
    6.3.5.-    		 GO:0000049 ... Q9WY94
    Q9X2I8    		 20882017
    10 3r9f:A (1.2) BS02 GSU ? GO:0016747 ... Q47510 21507941
    11 3r9f:B (1.2) BS02 GSU ? GO:0016747 ... Q47510 21507941
    12 3tle:A (1.3) BS01 GSU ? GO:0016787 ... Q47511 22388748
    13 3tle:B (1.3) BS01 GSU ? GO:0016787 ... Q47511 22388748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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