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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 780 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 4zs9:B (1.37) BS02 GLA ? GO:0015768 ... A0A1A9TA69 27502277
    402 4zza:A (2.02) BS03 GLA ? GO:0015768 ... A0A1A9TAB8 27502277
    403 4zza:B (2.02) BS02 GLA ? GO:0015768 ... A0A1A9TAB8 27502277
    404 5abp:A (1.8) BS01 GLA ? GO:0015407 ... P02924 2818726 MOAD: Kd=0.23uM
    PDBbind: -logKd/Ki=6.64, Kd=0.23uM
    405 5boa:A (2.708) BS02 GLA N/A N/A N/A 27086582
    406 5boa:B (2.708) BS02 GLA N/A N/A N/A 27086582
    407 5boa:C (2.708) BS02 GLA N/A N/A N/A 27086582
    408 5boa:D (2.708) BS02 GLA N/A N/A N/A 27086582
    409 5boa:E (2.708) BS02 GLA N/A N/A N/A 27086582
    410 5boa:F (2.708) BS02 GLA N/A N/A N/A 27086582
    411 5d61:A (1.6) BS03 GLA ? GO:0046872 ... Q8X123 26901797
    412 5d61:A (1.6) BS04 GLA ? GO:0046872 ... Q8X123 26901797
    413 5d61:A (1.6) BS05 GLA ? GO:0046872 ... Q8X123 26901797
    414 5d61:A (1.6) BS06 GLA ? GO:0046872 ... Q8X123 26901797
    415 5d61:A (1.6) BS07 GLA ? GO:0046872 ... Q8X123 26901797
    416 5d62:A (1.7) BS03 GLA ? GO:0046872 ... Q8X123 26901797
    417 5d62:A (1.7) BS04 GLA ? GO:0046872 ... Q8X123 26901797
    418 5d62:A (1.7) BS05 GLA ? GO:0046872 ... Q8X123 26901797
    419 5d62:A (1.7) BS06 GLA ? GO:0046872 ... Q8X123 26901797
    420 5d62:A (1.7) BS07 GLA ? GO:0046872 ... Q8X123 26901797
    421 5d63:A (1.65) BS03 GLA ? GO:0046872 ... Q8X123 26901797
    422 5d63:A (1.65) BS04 GLA ? GO:0046872 ... Q8X123 26901797
    423 5d63:A (1.65) BS05 GLA ? GO:0046872 ... Q8X123 26901797
    424 5d63:A (1.65) BS06 GLA ? GO:0046872 ... Q8X123 26901797
    425 5d63:A (1.65) BS07 GLA ? GO:0046872 ... Q8X123 26901797
    426 5dnf:A (2.549) BS02 GLA ? GO:0002407 ... P13501 27091995
    427 5dnf:F (2.549) BS01 GLA ? GO:0002407 ... P13501 27091995
    428 5dnf:H (2.549) BS02 GLA ? GO:0002407 ... P13501 27091995
    429 5e1q:A (1.943) BS02 GLA 3.2.1.22 GO:0004557 ... Q8A6L0 28103425
    430 5e1q:B (1.943) BS02 GLA 3.2.1.22 GO:0004557 ... Q8A6L0 28103425
    431 5elb:A (1.08) BS03 GLA ? GO:0005576 ... Q57193 27082955
    432 5elb:B (1.08) BS03 GLA ? GO:0005576 ... Q57193 27082955
    433 5elb:C (1.08) BS04 GLA ? GO:0005576 ... Q57193 27082955
    434 5elb:D (1.08) BS03 GLA ? GO:0005576 ... Q57193 27082955
    435 5elb:E (1.08) BS03 GLA ? GO:0005576 ... Q57193 27082955
    436 5elb:F (1.08) BS02 GLA ? GO:0005576 ... Q57193 27082955
    437 5elb:G (1.08) BS02 GLA ? GO:0005576 ... Q57193 27082955
    438 5elb:H (1.08) BS03 GLA ? GO:0005576 ... Q57193 27082955
    439 5elb:I (1.08) BS03 GLA ? GO:0005576 ... Q57193 27082955
    440 5elb:J (1.08) BS03 GLA ? GO:0005576 ... Q57193 27082955
    441 5eld:E (1.4) BS04 GLA ? GO:0005576 ... D6R7L2 27082955
    442 5f7w:A (2.81) BS04 GLA ? N/A O52269 26764597
    443 5f7w:B (2.81) BS03 GLA ? N/A O52269 26764597
    444 5f8w:A (1.56) BS02 GLA ? GO:0030246 ... H2FH31 27010847 MOAD: Kd=51uM
    445 5f8w:A (1.56) BS03 GLA ? GO:0030246 ... H2FH31 27010847 MOAD: Kd=51uM
    446 5f8w:B (1.56) BS01 GLA ? GO:0030246 ... H2FH31 27010847 MOAD: Kd=51uM
    447 5f8w:B (1.56) BS02 GLA ? GO:0030246 ... H2FH31 27010847 MOAD: Kd=51uM
    448 5f8w:B (1.56) BS03 GLA ? GO:0030246 ... H2FH31 27010847 MOAD: Kd=51uM
    449 5f90:A (1.64) BS01 GLA ? GO:0030246 ... H2FH31 27010847 PDBbind: -logKd/Ki=4.85, Kd=14uM
    450 5f90:A (1.64) BS02 GLA ? GO:0030246 ... H2FH31 27010847 PDBbind: -logKd/Ki=4.85, Kd=14uM
    451 5f90:B (1.64) BS01 GLA ? GO:0030246 ... H2FH31 27010847
    452 5f90:B (1.64) BS02 GLA ? GO:0030246 ... H2FH31 27010847
    453 5f90:B (1.64) BS03 GLA ? GO:0030246 ... H2FH31 27010847
    454 5f9d:A (2.59) BS03 GLA ? N/A O52269
    Q6DT10    		 26764597
    455 5fkc:A (1.82) BS04 GLA 3.2.1.26 GO:0004553 ... J7HDY4 26823463
    456 5fkc:B (1.82) BS04 GLA 3.2.1.26 GO:0004553 ... J7HDY4 26823463
    457 5j51:E (1.67) BS04 GLA ? GO:0005575 ... P18670 27808459
    458 5j51:E (1.67) BS05 GLA ? GO:0005575 ... P18670 27808459
    459 5j51:G (1.67) BS04 GLA ? GO:0005575 ... P18670 27808459
    460 5j51:G (1.67) BS05 GLA ? GO:0005575 ... P18670 27808459
    461 5jm1:E (1.95) BS06 GLA ? GO:0005575 ... P18670 27808459
    462 5lfe:A (2.3) BS02 GLA ? N/A M4QNL3 N/A
    463 5lsh:A (1.061) BS02 GLA 3.2.1.17 GO:0003796 ... P61626 29233221
    464 5lsh:A (1.061) BS04 GLA 3.2.1.17 GO:0003796 ... P61626 29233221
    465 5mu9:A (1.3) BS02 GLA ? GO:0046872 ... Q8X123 28665586
    466 5mu9:A (1.3) BS03 GLA ? GO:0046872 ... Q8X123 28665586
    467 5mu9:A (1.3) BS04 GLA ? GO:0046872 ... Q8X123 28665586
    468 5mu9:A (1.3) BS05 GLA ? GO:0046872 ... Q8X123 28665586
    469 5mu9:A (1.3) BS06 GLA ? GO:0046872 ... Q8X123 28665586
    470 5o7u:B (1.15) BS01 GLA ? GO:0030246 ... A0A0S4TLR1 29812892
    471 5o7v:A (1.28) BS03 GLA ? GO:0030246 ... A0A0S4TLR1 29812892
    472 5o7w:B (1.35) BS01 GLA ? GO:0030246 ... A0A0S4TLR1 29812892
    473 5ofx:A (1.75) BS02 GLA ? GO:0030246 ... Q7N561 28972138
    474 5ofx:B (1.75) BS02 GLA ? GO:0030246 ... Q7N561 28972138
    475 5ofx:C (1.75) BS01 GLA ? GO:0030246 ... Q7N561 28972138
    476 5ofx:D (1.75) BS01 GLA ? GO:0030246 ... Q7N561 28972138
    477 5ofx:E (1.75) BS02 GLA ? GO:0030246 ... Q7N561 28972138
    478 5ofx:F (1.75) BS01 GLA ? GO:0030246 ... Q7N561 28972138
    479 5ofx:H (1.75) BS01 GLA ? GO:0030246 ... Q7N561 28972138
    480 5tip:A (2.0) BS05 GLA ? GO:0005198 ... P30328 29255015
    481 5tip:B (2.0) BS04 GLA ? GO:0005198 ... P30328 29255015
    482 5tip:C (2.0) BS04 GLA ? GO:0005198 ... P30328 29255015
    483 5tip:D (2.0) BS04 GLA ? GO:0005198 ... P30328 29255015
    484 5tiq:A (2.537) BS05 GLA ? GO:0005198 ... P30328 29255015
    485 5tiq:B (2.537) BS05 GLA ? GO:0005198 ... P30328 29255015
    486 5x4a:A (3.4) BS01 GLA ? GO:0007155 ... A4CYJ6 28510705
    487 5x4a:C (3.4) BS01 GLA ? GO:0007155 ... A4CYJ6 28510705
    488 5x4a:H (3.4) BS01 GLA ? GO:0007155 ... A4CYJ6 28510705
    489 5x4a:I (3.4) BS01 GLA ? GO:0007155 ... A4CYJ6 28510705
    490 6eon:A (1.75) BS01 GLA ? GO:0004553 ... Q8AB22 30349080
    491 6epy:A (2.04) BS03 GLA N/A N/A N/A 29602905
    492 6epy:B (2.04) BS03 GLA N/A N/A N/A 29602905
    493 6epy:C (2.04) BS03 GLA N/A N/A N/A 29602905
    494 6epy:D (2.04) BS03 GLA N/A N/A N/A 29602905
    495 6epz:A (1.8) BS02 GLA N/A N/A N/A 29602905
    496 6epz:B (1.8) BS02 GLA N/A N/A N/A 29602905
    497 6epz:C (1.8) BS02 GLA N/A N/A N/A 29602905
    498 6epz:D (1.8) BS02 GLA N/A N/A N/A 29602905
    499 6eq0:A (2.45) BS01 GLA N/A N/A N/A 29602905 MOAD: Kd=24uM
    500 6eq0:B (2.45) BS01 GLA N/A N/A N/A 29602905 MOAD: Kd=24uM
    501 6f7k:A (2.1) BS02 GLA ? N/A A0A0C5PVE3 31189652
    502 6f7k:A (2.1) BS03 GLA ? N/A A0A0C5PVE3 31189652
    503 6f7k:B (2.1) BS02 GLA ? N/A A0A0C5PVE3 31189652
    504 6f7k:B (2.1) BS04 GLA ? N/A A0A0C5PVE3 31189652
    505 6f7k:C (2.1) BS01 GLA ? N/A A0A0C5PVE3 31189652
    506 6f7k:C (2.1) BS03 GLA ? N/A A0A0C5PVE3 31189652
    507 6f7k:D (2.1) BS02 GLA ? N/A A0A0C5PVE3 31189652
    508 6f7k:D (2.1) BS03 GLA ? N/A A0A0C5PVE3 31189652
    509 6f7k:F (2.1) BS02 GLA ? N/A A0A0C5PVE3 31189652
    510 6f7k:F (2.1) BS04 GLA ? N/A A0A0C5PVE3 31189652
    511 6f7k:G (2.1) BS02 GLA ? N/A A0A0C5PVE3 31189652
    512 6f7k:G (2.1) BS04 GLA ? N/A A0A0C5PVE3 31189652
    513 6h0h:A (1.39) BS03 GLA ? GO:0055085 ... B8DWA9 31186348
    514 6h0h:B (1.39) BS03 GLA ? GO:0055085 ... B8DWA9 31186348
    515 6hf4:A (1.781) BS02 GLA N/A GO:0004553 ... N/A 31000630
    516 6hpf:A (1.36) BS02 GLA 3.2.1.78 GO:0004553 ... A0A3G4RHU4 30783168
    517 6ksr:A (1.37) BS01 GLA 2.7.1.1 GO:0001678 ... U6KUE1 N/A
    518 6lcl:A (3.2) BS01 GLA ? GO:0004557 ... Q53W51 32390413
    519 6lcl:A (3.2) BS02 GLA ? GO:0004557 ... Q53W51 32390413
    520 6lcl:C (3.2) BS01 GLA ? GO:0004557 ... Q53W51 32390413
    521 6lcl:C (3.2) BS02 GLA ? GO:0004557 ... Q53W51 32390413
    522 6lcl:E (3.2) BS01 GLA ? GO:0004557 ... Q53W51 32390413
    523 6lcl:E (3.2) BS02 GLA ? GO:0004557 ... Q53W51 32390413
    524 6lik:A (2.4) BS05 GLA ? N/A E7E2M2 32112837
    525 6n1b:A (1.3) BS02 GLA ? N/A G9YSP4 31182795
    526 6phv:A (2.1) BS01 GLA 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    527 6phw:A (2.2) BS02 GLA 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    528 6phx:A (2.0) BS01 GLA 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    529 6phy:A (2.0) BS02 GLA 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    530 6phy:A (2.0) BS03 GLA 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    531 6phy:A (2.0) BS04 GLA 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    532 6pi0:A (2.09) BS02 GLA 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    533 6pql:A (2.65) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    534 6pql:B (2.65) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    535 6pql:C (2.65) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    536 6pql:D (2.65) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    537 6pre:A (2.4) BS02 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    538 6pre:A (2.4) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    539 6pre:A (2.4) BS04 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    540 6pre:B (2.4) BS02 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    541 6pre:B (2.4) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    542 6pre:B (2.4) BS04 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    543 6pre:C (2.4) BS02 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    544 6pre:C (2.4) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    545 6pre:C (2.4) BS04 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    546 6pre:D (2.4) BS02 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    547 6pre:D (2.4) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    548 6pre:D (2.4) BS04 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    549 6prg:A (2.35) BS02 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    550 6prg:A (2.35) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    551 6prg:B (2.35) BS02 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    552 6prg:B (2.35) BS03 GLA ? GO:0055085 ... A0A0H2URJ7 31591266
    553 6t1d:A (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    554 6t1d:A (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    555 6t1d:B (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    556 6t1d:B (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    557 6t1d:C (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    558 6t1d:C (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    559 6t1d:D (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    560 6t1d:D (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    561 6t1d:E (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    562 6t1d:E (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    563 6t1d:F (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    564 6t1d:F (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    565 6ter:A (1.68) BS01 GLA 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    566 6ter:B (1.68) BS01 GLA 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    567 6ter:C (1.68) BS01 GLA 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    568 6ter:D (1.68) BS01 GLA 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    569 6tsl:AAA (1.4) BS03 GLA ? GO:0046872 ... Q8X123 34235469
    570 6tsl:AAA (1.4) BS04 GLA ? GO:0046872 ... Q8X123 34235469
    571 6tsl:AAA (1.4) BS05 GLA ? GO:0046872 ... Q8X123 34235469
    572 6tsm:AAA (1.4) BS03 GLA ? GO:0046872 ... Q8X123 34235469
    573 6tsm:AAA (1.4) BS04 GLA ? GO:0046872 ... Q8X123 34235469
    574 6tsm:AAA (1.4) BS05 GLA ? GO:0046872 ... Q8X123 34235469
    575 6tsn:AAA (1.6) BS02 GLA ? GO:0046872 ... Q8X123 34235469
    576 6tsn:AAA (1.6) BS04 GLA ? GO:0046872 ... Q8X123 34235469
    577 6tsn:AAA (1.6) BS05 GLA ? GO:0046872 ... Q8X123 34235469
    578 6tsn:AAA (1.6) BS06 GLA ? GO:0046872 ... Q8X123 34235469
    579 6tso:AAA (2.1) BS02 GLA ? GO:0046872 ... Q8X123 34235469
    580 6tso:AAA (2.1) BS03 GLA ? GO:0046872 ... Q8X123 34235469
    581 6tso:AAA (2.1) BS04 GLA ? GO:0046872 ... Q8X123 34235469
    582 6tso:AAA (2.1) BS05 GLA ? GO:0046872 ... Q8X123 34235469
    583 6tso:AAA (2.1) BS06 GLA ? GO:0046872 ... Q8X123 34235469
    584 6tsp:AAA (1.85) BS02 GLA ? GO:0046872 ... Q8X123 N/A
    585 6tsp:AAA (1.85) BS04 GLA ? GO:0046872 ... Q8X123 N/A
    586 6tsp:AAA (1.85) BS05 GLA ? GO:0046872 ... Q8X123 N/A
    587 6tsp:AAA (1.85) BS06 GLA ? GO:0046872 ... Q8X123 N/A
    588 6tsq:AAA (1.85) BS02 GLA ? GO:0046872 ... Q8X123 34235469
    589 6tsq:AAA (1.85) BS03 GLA ? GO:0046872 ... Q8X123 34235469
    590 6tsq:AAA (1.85) BS04 GLA ? GO:0046872 ... Q8X123 34235469
    591 6tsq:AAA (1.85) BS05 GLA ? GO:0046872 ... Q8X123 34235469
    592 6tsq:AAA (1.85) BS06 GLA ? GO:0046872 ... Q8X123 34235469
    593 6tsr:AAA (1.85) BS02 GLA ? GO:0046872 ... Q8X123 34235469
    594 6tsr:AAA (1.85) BS03 GLA ? GO:0046872 ... Q8X123 34235469
    595 6tsr:AAA (1.85) BS04 GLA ? GO:0046872 ... Q8X123 34235469
    596 6tsr:AAA (1.85) BS05 GLA ? GO:0046872 ... Q8X123 34235469
    597 6tsr:AAA (1.85) BS06 GLA ? GO:0046872 ... Q8X123 34235469
    598 6ug7:H (1.52) BS01 GLA N/A N/A N/A 31831622
    599 6ug7:L (1.52) BS01 GLA N/A N/A N/A 31831622
    600 6ug8:H (1.89) BS01 GLA N/A N/A N/A 31831622
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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