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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 6y60:EEE (1.798) BS02 GAL ? GO:0005198 ... M4T5D3 32723915
    2202 6y78:A (1.7) BS02 GAL ? GO:0030246 ... P17931 32876583
    2203 6y98:A (2.8) BS02 GAL ? N/A B4UMX2 32669365
    2204 6y9j:A (1.1) BS02 GAL ? N/A Q6FUW5 32669365
    2205 6yh0:AAA (1.56) BS02 GAL ? GO:0046872 ... Q8X123 34235469
    2206 6ysc:A (2.05) BS02 GAL ? N/A P0DOX5 33009381
    2207 6ysc:B (2.05) BS03 GAL ? N/A P0DOX5 33009381
    2208 6yt7:A (1.55) BS02 GAL ? N/A P0DOX5 33009381
    2209 6yt7:B (1.55) BS01 GAL ? N/A P01857 33009381
    2210 6ytb:A (1.65) BS01 GAL ? N/A P0DOX5 33009381
    2211 6ytb:B (1.65) BS01 GAL ? N/A P0DOX5 33009381
    2212 6z2p:A (2.16) BS02 GAL ? GO:0046872 ... B2UR60 32973204
    2213 6z2q:A (2.347) BS02 GAL ? GO:0046872 ... B2UR60 32973204
    2214 6zfh:A (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2215 6zfh:B (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2216 6zfh:C (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2217 6zfh:D (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2218 6zfh:E (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2219 6zfh:F (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2220 6zfh:G (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2221 6zfh:H (2.439) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2222 6zgv:A (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2223 6zgv:B (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2224 6zgv:E (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2225 6zgw:A (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2226 6zgw:B (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2227 6zgw:E (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2228 6zgx:A (1.86) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2229 6zgx:B (1.86) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2230 6zgx:E (1.86) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2231 6zgy:A (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2232 6zgy:B (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2233 6zgy:E (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2234 6zgz:A (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2235 6zgz:B (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2236 6zgz:E (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2237 6zh0:A (2.5) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2238 6zh0:B (2.5) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2239 6zh0:E (2.5) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2240 6zjq:A (1.7) BS01 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2241 6zjq:A (1.7) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2242 6zjr:A (2.0) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2243 6zjr:A (2.0) BS03 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2244 6zjs:A (1.5) BS01 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2245 6zjs:A (1.5) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2246 6zjs:A (1.5) BS03 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2247 6zjs:A (1.5) BS04 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2248 6zjs:A (1.5) BS05 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2249 6zjt:A (1.97) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2250 6zjt:A (1.97) BS03 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2251 6zjt:A (1.97) BS04 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2252 6zjt:A (1.97) BS05 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2253 6zjw:A (2.119) BS01 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    2254 6zvm:AAA (1.8) BS01 GAL ? GO:0005576 ... Q8GR96 32957706
    2255 7all:AAA (1.63) BS01 GAL ? GO:0004065 ... Q89YP8 34616040
    2256 7als:A (1.35) BS02 GAL ? GO:0030246 ... O00214 N/A
    2257 7als:A (1.35) BS04 GAL ? GO:0030246 ... O00214 N/A
    2258 7als:B (1.35) BS02 GAL ? GO:0030246 ... O00214 N/A
    2259 7als:B (1.35) BS04 GAL ? GO:0030246 ... O00214 N/A
    2260 7an1:AAA (1.5) BS01 GAL ? GO:0016787 ... Q8A789 34616040
    2261 7blg:A (1.18) BS01 GAL ? N/A Q8A3D9 N/A
    2262 7blh:AAAA (1.79) BS01 GAL ? N/A Q8A3D9 N/A
    2263 7blj:A (1.76) BS01 GAL ? N/A Q8A3D9 N/A
    2264 7byt:A (1.5) BS03 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2265 7byv:A (2.5) BS01 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2266 7byv:A (2.5) BS02 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2267 7byv:A (2.5) BS03 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2268 7byv:A (2.5) BS05 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2269 7byx:A (2.3) BS01 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2270 7byx:A (2.3) BS02 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2271 7byx:B (2.3) BS01 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2272 7byx:B (2.3) BS02 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2273 7byx:C (2.3) BS01 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2274 7byx:C (2.3) BS02 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2275 7byx:D (2.3) BS01 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2276 7byx:D (2.3) BS02 GAL 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    2277 7cwd:A (2.0) BS02 GAL 3.2.1.23 GO:0004553 ... A0A6M5K904 33169609
    2278 7cwd:A (2.0) BS03 GAL 3.2.1.23 GO:0004553 ... A0A6M5K904 33169609
    2279 7cya:A (1.71) BS02 GAL ? GO:0030246 ... A0A2K6TQH4 34080003
    2280 7ee4:A (1.4) BS01 GAL ? N/A A0A716TY65 35012347
    2281 7ee5:A (1.24) BS01 GAL ? N/A A0A716TY65 35012347
    2282 7eqw:A (2.15) BS01 GAL ? N/A Q66418 35658530
    2283 7exf:A (2.17) BS01 GAL 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    2284 7exf:B (2.17) BS01 GAL 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    2285 7exg:A (2.05) BS01 GAL 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    2286 7exg:B (2.05) BS01 GAL 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    2287 7exq:A (2.2) BS03 GAL 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    2288 7exq:B (2.2) BS01 GAL 2.4.1.82 GO:0016757 ... Q8RX87 36762861
    2289 7jhm:A (2.19) BS01 GAL 2.4.1.149 GO:0006486 ... Q9NY97 33158990
    2290 7jhm:B (2.19) BS01 GAL 2.4.1.149 GO:0006486 ... Q9NY97 33158990
    2291 7jhn:A (2.2) BS01 GAL 2.4.1.149 GO:0006486 ... Q9NY97 33158990
    2292 7jhz:A (2.68) BS01 GAL ? GO:0019028 ... H6WUJ8 34475219
    2293 7jw4:A (2.342) BS02 GAL N/A N/A N/A 33127644
    2294 7jwf:A (2.187) BS01 GAL N/A N/A N/A 33127644
    2295 7jwf:B (2.187) BS01 GAL N/A N/A N/A 33127644
    2296 7jwf:C (2.187) BS01 GAL N/A N/A N/A 33127644
    2297 7jwf:D (2.187) BS01 GAL N/A N/A N/A 33127644
    2298 7kd0:A (2.768) BS01 GAL 3.2.2.22 GO:0017148 ... P02879 34089718
    2299 7kd0:B (2.768) BS01 GAL 3.2.2.22 N/A P02879 34089718
    2300 7khu:A (2.54) BS01 GAL ? GO:0019028 ... E9BVI9 34475219
    2301 7ki5:B (1.52) BS02 GAL ? GO:0019028 ... Q91E88 34475219
    2302 7ki5:B (1.52) BS03 GAL ? GO:0019028 ... Q91E88 34475219
    2303 7kmj:A (1.33) BS01 GAL ? N/A A8AWU7 35585145
    2304 7l56:A (3.6) BS01 GAL ? GO:0016020 ... P0DTC2 33794145
    2305 7l56:B (3.6) BS01 GAL ? GO:0016020 ... P0DTC2 33794145
    2306 7l56:C (3.6) BS01 GAL ? GO:0016020 ... P0DTC2 33794145
    2307 7l56:F (3.6) BS02 GAL N/A N/A N/A 33794145
    2308 7l56:H (3.6) BS02 GAL N/A N/A N/A 33794145
    2309 7l64:A (1.35) BS01 GAL ? N/A P22897 33545173
    2310 7lbl:A (2.13) BS02 GAL ? N/A Q6PYX1 N/A
    2311 7lbl:B (2.13) BS01 GAL ? N/A Q6PYX1 N/A
    2312 7lf5:A (2.6) BS01 GAL ? N/A Q6MZV7 N/A
    2313 7lf9:B (2.2) BS02 GAL ? N/A Q6MZV7 N/A
    2314 7lfn:A (2.6) BS01 GAL ? N/A Q6MZV7 N/A
    2315 7lfn:B (2.6) BS01 GAL ? N/A Q6MZV7 N/A
    2316 7lj2:A (2.4) BS01 GAL ? GO:0016787 ... A0A4Y1VMZ7 35289327
    2317 7lj2:B (2.4) BS01 GAL ? GO:0016787 ... A0A4Y1VMZ7 35289327
    2318 7lvb:A (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2319 7lvb:B (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2320 7lvb:C (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2321 7lvb:D (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2322 7lvb:E (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2323 7lvb:F (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2324 7lvb:G (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2325 7lvb:H (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2326 7lvb:I (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2327 7lvb:J (2.25) BS01 GAL ? GO:0005515 ... P01556
    P19503    		 37153584
    2328 7n57:A (1.83) BS02 GAL ? GO:0005515 ... P47929 N/A
    2329 7n57:B (1.83) BS02 GAL ? GO:0005515 ... P47929 N/A
    2330 7n8d:A (2.49) BS02 GAL ? GO:0005515 ... P47929 N/A
    2331 7n8d:B (2.49) BS02 GAL ? GO:0005515 ... P47929 N/A
    2332 7nyt:A (1.09) BS01 GAL 3.2.1.91 GO:0004553 ... P62694 35997626
    2333 7nyt:A (1.09) BS03 GAL 3.2.1.91 GO:0004553 ... P62694 35997626
    2334 7oc8:A (1.6) BS02 GAL 3.2.1.91 GO:0004553 ... P62694 35997626
    2335 7ovw:AAA (2.2) BS01 GAL ? GO:0005576 ... A5H0J8 34361086
    2336 7ovw:BBB (2.2) BS01 GAL ? GO:0005576 ... A5H0J8 34361086
    2337 7ozx:A (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2338 7ozx:B (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2339 7ozx:C (2.3) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2340 7p8h:A (1.13) BS01 GAL N/A GO:0030246 ... N/A 34944498
    2341 7p8h:C (1.13) BS01 GAL N/A GO:0030246 ... N/A 34944498
    2342 7q15:E (3.301) BS02 GAL ? N/A P01857 36241613
    2343 7q20:A (1.95) BS01 GAL ? GO:0005975 ... A7B6A6 34936658
    2344 7q20:G (1.95) BS01 GAL ? GO:0005975 ... A7B6A6 34936658
    2345 7q3n:U (7.4) BS02 GAL ? GO:0000922 ... P07911 35273390
    2346 7qcl:A (3.36) BS02 GAL ? N/A Q02817 37031240
    2347 7qpt:A (2.3) BS01 GAL ? GO:0005576 ... Q3LRX8 35202156
    2348 7qpt:B (2.3) BS01 GAL ? GO:0005576 ... Q3LRX8 35202156
    2349 7qpu:A (2.4) BS01 GAL 3.4.24.69 GO:0005576 ... C1IPK2 35202156
    2350 7r55:A (1.84) BS02 GAL ? N/A F2UID9 36097056
    2351 7r55:A (1.84) BS05 GAL ? N/A F2UID9 36097056
    2352 7r55:B (1.84) BS04 GAL ? N/A F2UID9 36097056
    2353 7rdg:A (3.0) BS02 GAL ? GO:0005515 ... P47929 N/A
    2354 7rdg:B (3.0) BS02 GAL ? GO:0005515 ... P47929 N/A
    2355 7rdg:C (3.0) BS02 GAL ? GO:0005515 ... P47929 N/A
    2356 7rdg:D (3.0) BS02 GAL ? GO:0005515 ... P47929 N/A
    2357 7sno:A (2.1) BS01 GAL 3.1.6.- GO:0016787 ... B5CYA4 N/A
    2358 7t1v:A (2.05) BS01 GAL ? GO:0019031 ... A0A348FV55 35044215
    2359 7t1v:C (2.05) BS01 GAL ? GO:0019031 ... A0A348FV55 35044215
    2360 7t1v:E (2.05) BS01 GAL ? GO:0019031 ... A0A348FV55 35044215
    2361 7tkz:A (1.83) BS02 GAL ? GO:0005515 ... P47929 N/A
    2362 7tkz:B (1.83) BS02 GAL ? GO:0005515 ... P47929 N/A
    2363 7tro:B (1.8) BS02 GAL ? GO:0005515 ... P47929 N/A
    2364 7uem:D (2.314) BS01 GAL N/A N/A N/A 35867757
    2365 7uem:H (2.314) BS01 GAL N/A N/A N/A 35867757
    2366 7uen:H (1.55) BS01 GAL N/A N/A N/A 35867757
    2367 7v6i:A (2.51) BS01 GAL ? N/A A0A087D8U9 35092420
    2368 7v6m:A (1.92) BS01 GAL N/A N/A N/A 35092420
    2369 7vfq:A (1.55) BS02 GAL ? GO:0015768 ... B7GN82 N/A
    2370 7vfq:A (1.55) BS03 GAL ? GO:0015768 ... B7GN82 N/A
    2371 7vfq:B (1.55) BS02 GAL ? GO:0015768 ... B7GN82 N/A
    2372 7vfq:B (1.55) BS03 GAL ? GO:0015768 ... B7GN82 N/A
    2373 7vfq:C (1.55) BS02 GAL ? GO:0015768 ... B7GN82 N/A
    2374 7vfq:C (1.55) BS03 GAL ? GO:0015768 ... B7GN82 N/A
    2375 7vfq:D (1.55) BS02 GAL ? GO:0015768 ... B7GN82 N/A
    2376 7vfq:D (1.55) BS03 GAL ? GO:0015768 ... B7GN82 N/A
    2377 7vfr:A (1.56) BS02 GAL ? GO:0015768 ... B7GN82 N/A
    2378 7vs8:A (2.4) BS01 GAL ? N/A F2XMU3 35038379
    2379 7vs8:B (2.4) BS02 GAL ? N/A F2XMU3 35038379
    2380 7vs9:A (2.26) BS02 GAL ? N/A F2XMU3 35038379
    2381 7vs9:B (2.26) BS02 GAL ? N/A F2XMU3 35038379
    2382 7xxv:A (1.6) BS02 GAL ? GO:0030246 ... G7PXK5 36988350
    2383 7xxy:A (1.92) BS01 GAL N/A GO:0030246 ... N/A 36988350
    2384 7ywf:A (2.6) BS01 GAL ? N/A Q306J3 36009020
    2385 7ywf:A (2.6) BS02 GAL ? N/A Q306J3 36009020
    2386 7ywf:B (2.6) BS01 GAL ? N/A Q306J3 36009020
    2387 7ywf:B (2.6) BS02 GAL ? N/A Q306J3 36009020
    2388 7ywf:C (2.6) BS01 GAL ? N/A Q306J3 36009020
    2389 7yx8:A (1.5) BS03 GAL ? GO:0046872 ... B2UPI7 35882872
    2390 7yx8:B (1.5) BS03 GAL ? GO:0046872 ... B2UPI7 35882872
    2391 7z5s:BBB (2.1) BS01 GAL ? GO:0005576 ... K4GGE0 35622602
    2392 8abp:A (1.49) BS02 GAL ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.01uM
    2393 8agk:AAA (1.5) BS01 GAL ? GO:0005576 ... C9WWY7 36077016
    2394 8axi:A (1.25) BS01 GAL ? GO:0046872 ... B2ULI1 37005422
    2395 8axi:A (1.25) BS03 GAL ? GO:0046872 ... B2ULI1 37005422
    2396 8axi:B (1.25) BS01 GAL ? GO:0046872 ... B2ULI1 37005422
    2397 8axi:B (1.25) BS03 GAL ? GO:0046872 ... B2ULI1 37005422
    2398 8b8f:A (1.0) BS01 GAL ? N/A B0D650 36754262
    2399 8b8f:A (1.0) BS02 GAL ? N/A B0D650 36754262
    2400 8b8f:A (1.0) BS03 GAL ? N/A B0D650 36754262
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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