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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 5nlh:A (1.1) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1802 5nm1:A (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1803 5nm1:B (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1804 5nm1:C (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1805 5nm1:D (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1806 5nmj:A (1.399) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1807 5nrb:A (2.24) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 28960760
    1808 5nrd:A (2.12) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 28960760
    1809 5nre:A (1.98) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 28960760
    1810 5nsc:A (2.3) BS02 GAL ? N/A Q6MZV7 28655766
    1811 5nsc:B (2.3) BS02 GAL ? N/A Q6MZV7 28655766
    1812 5o7u:A (1.15) BS03 GAL ? GO:0030246 ... A0A0S4TLR1 29812892
    1813 5o7u:A (1.15) BS04 GAL ? GO:0030246 ... A0A0S4TLR1 29812892
    1814 5o7w:A (1.35) BS03 GAL ? GO:0030246 ... A0A0S4TLR1 29812892
    1815 5oye:B (1.9) BS01 GAL 3.2.1.4 GO:0000272 ... B3PD52 29467823
    1816 5t0e:A (2.089) BS01 GAL ? GO:0005886 ... A0A0J9X268 28694323
    1817 5t7i:A (2.0) BS02 GAL ? GO:0030246 ... O00214 28000747
    1818 5t7i:A (2.0) BS03 GAL ? GO:0030246 ... O00214 28000747
    1819 5t7s:A (1.9) BS02 GAL ? GO:0030246 ... O00214 28000747
    1820 5t7t:A (1.96) BS01 GAL ? GO:0030246 ... O00214 28000747
    1821 5ta0:A (1.4) BS01 GAL ? N/A A0A2D0TCD2 29535379
    1822 5ta0:A (1.4) BS04 GAL ? N/A A0A2D0TCD2 29535379
    1823 5ta5:A (1.65) BS01 GAL ? GO:0046872 ... A0A2D0TCD3 29535379
    1824 5ta5:A (1.65) BS04 GAL ? GO:0046872 ... A0A2D0TCD3 29535379
    1825 5ta9:A (2.4) BS01 GAL ? GO:0004553 ... A0A2D0TCD6 29535379
    1826 5ta9:B (2.4) BS01 GAL ? GO:0004553 ... A0A2D0TCD6 29535379
    1827 5ta9:C (2.4) BS01 GAL ? GO:0004553 ... A0A2D0TCD6 29535379
    1828 5ta9:D (2.4) BS01 GAL ? GO:0004553 ... A0A2D0TCD6 29535379
    1829 5tpb:B (2.6) BS01 GAL 3.4.24.69 GO:0005576 ... P0DPI1 27958736
    1830 5tpc:A (2.0) BS01 GAL 3.4.24.69 GO:0005576 ... P0DPI1 27958736 PDBbind: -logKd/Ki=3.00, Kd=1.0mM
    1831 5tps:A (2.7) BS02 GAL ? N/A P01857 N/A
    1832 5tps:B (2.7) BS01 GAL ? N/A P01857 N/A
    1833 5u4y:A (2.4994) BS01 GAL ? N/A P01857 28475752
    1834 5u52:A (1.942) BS01 GAL ? N/A P01857 28475752
    1835 5u52:B (1.942) BS01 GAL ? N/A P01857 28475752
    1836 5u66:A (1.7) BS02 GAL ? N/A P01857 28475752
    1837 5u75:A (1.66) BS01 GAL ? GO:0005576 ... G0Z026 28880913
    1838 5uf1:A (2.03) BS01 GAL N/A N/A N/A 28988747
    1839 5uf1:B (2.03) BS01 GAL N/A N/A N/A 28988747
    1840 5uf4:A (2.04) BS02 GAL N/A N/A N/A 28988747
    1841 5uf4:B (2.04) BS02 GAL N/A N/A N/A 28988747
    1842 5uf4:C (2.04) BS02 GAL N/A N/A N/A 28988747
    1843 5ufc:A (1.888) BS01 GAL N/A N/A N/A 28988747
    1844 5ufc:B (1.888) BS01 GAL N/A N/A N/A 28988747
    1845 5ufc:C (1.888) BS01 GAL N/A N/A N/A 28988747
    1846 5uff:A (2.137) BS01 GAL N/A N/A N/A 28988747
    1847 5vaa:A (1.55) BS02 GAL ? N/A P01863 28559564
    1848 5vaa:B (1.55) BS01 GAL ? N/A P01863 28559564
    1849 5vgp:A (2.116) BS02 GAL ? N/A Q6PYX1 30198883
    1850 5vh5:A (1.75) BS02 GAL N/A N/A N/A 28421849
    1851 5vki:B (1.9) BS01 GAL ? GO:0019028 ... A7YCM0 29136651
    1852 5vkm:A (2.2) BS01 GAL ? N/A P20273 28970495 PDBbind: -logKd/Ki=3.55, Kd=281uM
    1853 5vks:A (1.94) BS01 GAL ? GO:0019028 ... A7YCM0 29136651
    1854 5vks:A (1.94) BS02 GAL ? GO:0019028 ... A7YCM0 29136651
    1855 5vks:B (1.94) BS01 GAL ? GO:0019028 ... A7YCM0 29136651
    1856 5vks:B (1.94) BS02 GAL ? GO:0019028 ... A7YCM0 29136651
    1857 5vmc:A (2.15) BS01 GAL ? GO:0019031 ... Q9WFX3 29055255
    1858 5vmc:C (2.15) BS01 GAL ? GO:0019031 ... Q9WFX3 29055255
    1859 5vmc:E (2.15) BS01 GAL ? GO:0019031 ... Q9WFX3 29055255
    1860 5vmf:A (2.35) BS01 GAL ? GO:0019031 ... Q9WFX3 29055255
    1861 5vmf:C (2.35) BS01 GAL ? GO:0019031 ... Q9WFX3 29055255
    1862 5vmf:E (2.35) BS01 GAL ? GO:0019031 ... Q9WFX3 29055255
    1863 5vtv:C (2.25) BS01 GAL ? GO:0019031 ... Q91MA7 28618270
    1864 5vu0:A (2.26) BS01 GAL ? N/A P0DOX5 30016589
    1865 5vu0:B (2.26) BS02 GAL ? N/A P0DOX5 30016589
    1866 5vx5:A (1.285) BS01 GAL ? GO:0019028 ... Q2VE61 29980685
    1867 5vx9:A (1.822) BS02 GAL ? GO:0019028 ... D7F7M7 29980685
    1868 5w5l:A (1.9) BS02 GAL ? N/A P0DOX5 31548527
    1869 5w5l:B (1.9) BS02 GAL ? N/A P0DOX5 31548527
    1870 5w5m:A (1.9) BS02 GAL ? N/A P01861 31548527
    1871 5w5m:B (1.9) BS02 GAL ? N/A P01861 31548527
    1872 5w5n:A (1.85) BS02 GAL ? N/A P01861 31548527
    1873 5w5n:B (1.85) BS02 GAL ? N/A P01861 31548527
    1874 5xfd:A (1.5) BS01 GAL ? GO:0030246 ... A0A2D0TCI3 28989719
    1875 5xfd:B (1.5) BS01 GAL ? GO:0030246 ... A0A2D0TCI3 28989719
    1876 5xje:A (2.4) BS01 GAL ? N/A P0DOX5 29062024
    1877 5xje:B (2.4) BS02 GAL ? N/A P0DOX5 29062024
    1878 5xjf:A (2.5) BS01 GAL ? N/A P0DOX5 29062024
    1879 5xjf:B (2.5) BS01 GAL ? N/A P0DOX5 29062024
    1880 5xoo:A (2.85) BS02 GAL ? GO:0005524 ... T2MHS6 29572475
    1881 5xqj:A (2.75) BS03 GAL ? GO:0046872 ... B6H7Q7 29574769
    1882 5xqj:C (2.75) BS03 GAL ? GO:0046872 ... B6H7Q7 29574769
    1883 5xqj:E (2.75) BS03 GAL ? GO:0046872 ... B6H7Q7 29574769
    1884 5xqj:F (2.75) BS03 GAL ? GO:0046872 ... B6H7Q7 29574769
    1885 5xqj:G (2.75) BS03 GAL ? GO:0046872 ... B6H7Q7 29574769
    1886 5xrs:C (2.907) BS02 GAL ? GO:0019031 ... I0AXC3 29991715
    1887 5y56:A (2.653) BS01 GAL ? N/A P0DOX5 28878018
    1888 5y56:B (2.653) BS02 GAL ? N/A P0DOX5 28878018
    1889 5y97:C (3.05) BS01 GAL ? N/A U3KRF8 30099481
    1890 5y97:C (3.05) BS02 GAL ? N/A U3KRF8 30099481
    1891 5yc5:A (2.71) BS02 GAL ? N/A P0DOX5 29500371
    1892 5ymt:C (2.199) BS01 GAL ? GO:0019028 ... Q9Q2P6 29720519
    1893 5ymt:C (2.199) BS02 GAL ? GO:0019028 ... Q9Q2P6 29720519
    1894 5ymt:D (2.199) BS01 GAL ? GO:0019028 ... Q9Q2P6 29720519
    1895 5ymt:D (2.199) BS02 GAL ? GO:0019028 ... Q9Q2P6 29720519
    1896 5ymt:G (2.199) BS01 GAL ? GO:0019028 ... Q9Q2P6 29720519
    1897 5ymt:G (2.199) BS02 GAL ? GO:0019028 ... Q9Q2P6 29720519
    1898 5z6b:A (1.582) BS03 GAL ? N/A O31518 N/A
    1899 5zvc:A (1.8) BS01 GAL ? N/A A0A0D6CBA8 30333166
    1900 5zvc:B (1.8) BS01 GAL ? N/A A0A0D6CBA8 30333166
    1901 6a1t:A (1.97) BS01 GAL ? GO:0002667 ... Q05315 30239701
    1902 6a56:A (1.2) BS01 GAL ? GO:0030246 ... A0A2Z5WLM1 30068923
    1903 6a56:B (1.2) BS01 GAL ? GO:0030246 ... A0A2Z5WLM1 30068923
    1904 6a62:A (2.03) BS01 GAL ? GO:0004622 ... Q9UHV8 30413611
    1905 6a63:A (1.63) BS01 GAL ? GO:0004622 ... Q9UHV8 30413611
    1906 6a64:A (1.63) BS01 GAL ? GO:0004622 ... Q9UHV8 30413611
    1907 6aov:A (1.75) BS01 GAL ? GO:0005886 ... B2VNK2 29059230
    1908 6aox:A (2.1) BS01 GAL ? GO:0007155 ... Q1RBS0 29507247
    1909 6aox:B (2.1) BS01 GAL ? GO:0007155 ... Q1RBS0 29507247
    1910 6aq5:A (2.194) BS02 GAL ? GO:0030246 ... Q6YD91 N/A
    1911 6aq5:B (2.194) BS02 GAL ? GO:0030246 ... Q6YD91 N/A
    1912 6aq6:A (1.903) BS01 GAL ? GO:0030246 ... Q6YD91 30086239
    1913 6aq6:B (1.903) BS01 GAL ? GO:0030246 ... Q6YD91 30086239
    1914 6b8k:A (1.28) BS02 GAL ? GO:0030246 ... P17931 29888844
    1915 6b94:A (1.8) BS02 GAL ? GO:0002317 ... P09382 29888844
    1916 6b94:B (1.8) BS02 GAL ? GO:0002317 ... P09382 29888844
    1917 6bhq:A (2.05) BS01 GAL ? N/A Q58E56 29408873
    1918 6bhq:B (2.05) BS02 GAL ? N/A Q58E56 29408873
    1919 6d8d:A (3.55) BS01 GAL ? GO:0019031 ... A0A2I7YV81 29848588
    1920 6d8d:E (3.55) BS01 GAL ? GO:0019031 ... A0A2I7YV81 29848588
    1921 6dcq:H (3.1) BS01 GAL ? N/A S6B291 29898396
    1922 6dcq:H (3.1) BS02 GAL ? N/A S6B291 29898396
    1923 6dcq:M (3.1) BS01 GAL ? N/A S6B291 29898396
    1924 6dcq:M (3.1) BS02 GAL ? N/A S6B291 29898396
    1925 6e20:A (2.0) BS01 GAL ? GO:0001944 ... Q6TGN5 30834446
    1926 6e20:B (2.0) BS01 GAL ? GO:0001944 ... Q6TGN5 30834446
    1927 6eaq:A (2.22) BS01 GAL ? N/A P0DOX5 30361439
    1928 6eaq:B (2.22) BS02 GAL ? N/A P0DOX5 30361439
    1929 6efd:A (1.85) BS01 GAL ? N/A A8AWU7 35585145
    1930 6eq1:A (2.1) BS03 GAL N/A N/A N/A 29602905
    1931 6eq1:A (2.1) BS04 GAL N/A N/A N/A 29602905
    1932 6eq1:B (2.1) BS03 GAL N/A N/A N/A 29602905
    1933 6eq1:B (2.1) BS04 GAL N/A N/A N/A 29602905
    1934 6euf:A (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    1935 6euf:B (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    1936 6euf:C (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    1937 6euf:D (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    1938 6eui:A (1.76) BS01 GAL ? GO:0004553 ... Q8A1H8 30349080
    1939 6eui:A (1.76) BS02 GAL ? GO:0004553 ... Q8A1H8 30349080
    1940 6eym:A (1.1) BS02 GAL ? N/A P17931 29672051
    1941 6f2z:A (2.3) BS02 GAL ? N/A P01857 N/A
    1942 6f2z:B (2.3) BS01 GAL ? N/A P01857 N/A
    1943 6f6y:A (1.41) BS01 GAL ? GO:0030246 ... P17931 N/A
    1944 6fk2:A (1.01) BS02 GAL ? GO:0030246 ... P17931 N/A
    1945 6fof:A (2.2) BS02 GAL ? GO:0030246 ... P17931 29959397
    1946 6fof:A (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1947 6fof:B (2.2) BS01 GAL ? GO:0030246 ... P17931 29959397
    1948 6fof:B (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1949 6fof:C (2.2) BS02 GAL ? GO:0030246 ... P17931 29959397
    1950 6fof:C (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1951 6fof:D (2.2) BS01 GAL ? GO:0030246 ... P17931 29959397
    1952 6fof:D (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1953 6fof:E (2.2) BS02 GAL ? GO:0030246 ... P17931 29959397
    1954 6fof:E (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1955 6fof:F (2.2) BS02 GAL ? GO:0030246 ... P17931 29959397
    1956 6fof:F (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1957 6fof:G (2.2) BS01 GAL ? GO:0030246 ... P17931 29959397
    1958 6fof:G (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1959 6fof:H (2.2) BS02 GAL ? GO:0030246 ... P17931 29959397
    1960 6fof:H (2.2) BS04 GAL ? GO:0030246 ... P17931 29959397
    1961 6fof:I (2.2) BS02 GAL ? GO:0030246 ... P17931 29959397
    1962 6fof:I (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1963 6fof:J (2.2) BS01 GAL ? GO:0030246 ... P17931 29959397
    1964 6fof:J (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1965 6fof:K (2.2) BS02 GAL ? GO:0030246 ... P17931 29959397
    1966 6fof:K (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1967 6fof:L (2.2) BS01 GAL ? GO:0030246 ... P17931 29959397
    1968 6fof:L (2.2) BS03 GAL ? GO:0030246 ... P17931 29959397
    1969 6fx2:A (1.7) BS01 GAL ? GO:0046872 ... A0A3B6UEU4 29956878
    1970 6fx2:B (1.7) BS01 GAL ? GO:0046872 ... A0A3B6UEU4 29956878
    1971 6g1e:A (1.88) BS02 GAL ? N/A P01857
    P01860    		 32404368
    1972 6g1e:B (1.88) BS02 GAL ? N/A P0DOX5 32404368
    1973 6gpa:A (1.79) BS01 GAL 3.2.1.89 GO:0015926 ... Q89YR3 30553858
    1974 6gpa:B (1.79) BS01 GAL 3.2.1.89 GO:0015926 ... Q89YR3 30553858
    1975 6gr2:A (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1976 6gr2:B (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1977 6gr2:C (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1978 6gr2:D (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1979 6gr2:E (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1980 6gr2:F (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1981 6gr2:G (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1982 6gr2:H (2.49) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    1983 6gt9:A (1.894) BS01 GAL ? GO:0030246 ... W8QN64 N/A
    1984 6gt9:B (1.894) BS01 GAL ? GO:0030246 ... W8QN64 N/A
    1985 6gt9:C (1.894) BS01 GAL ? GO:0030246 ... W8QN64 N/A
    1986 6gt9:D (1.894) BS01 GAL ? GO:0030246 ... W8QN64 N/A
    1987 6h0h:A (1.39) BS01 GAL ? GO:0055085 ... B8DWA9 31186348
    1988 6h0h:A (1.39) BS02 GAL ? GO:0055085 ... B8DWA9 31186348
    1989 6h0h:A (1.39) BS04 GAL ? GO:0055085 ... B8DWA9 31186348
    1990 6h0h:B (1.39) BS01 GAL ? GO:0055085 ... B8DWA9 31186348
    1991 6h0h:B (1.39) BS02 GAL ? GO:0055085 ... B8DWA9 31186348
    1992 6h0h:B (1.39) BS04 GAL ? GO:0055085 ... B8DWA9 31186348
    1993 6h64:A (1.8) BS02 GAL ? GO:0030246 ... P17931 30298550
    1994 6h64:A (1.8) BS03 GAL ? GO:0030246 ... P17931 30298550
    1995 6h64:B (1.8) BS02 GAL ? GO:0030246 ... P17931 30298550
    1996 6h64:B (1.8) BS03 GAL ? GO:0030246 ... P17931 30298550
    1997 6h64:C (1.8) BS02 GAL ? GO:0030246 ... P17931 30298550
    1998 6h64:D (1.8) BS02 GAL ? GO:0030246 ... P17931 30298550
    1999 6h64:E (1.8) BS01 GAL ? GO:0030246 ... P17931 30298550
    2000 6h64:E (1.8) BS03 GAL ? GO:0030246 ... P17931 30298550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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