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BioLiP Library
Download all results in tab-seperated text for 1605 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 6c6h:A (2.0) BS01 FUC ? N/A P11609 31391251
    1002 6c6j:A (1.79) BS01 FUC ? N/A P11609 31391251
    1003 6cjx:B (2.44) BS01 FUC ? N/A Q6MZV7 32209433
    1004 6cw6:A (2.85) BS01 FUC ? N/A P11609 31391251
    1005 6cw9:A (2.0) BS01 FUC ? N/A P11609 31391251
    1006 6cwb:A (2.85) BS01 FUC ? N/A P11609 31391251
    1007 6cwe:A (2.2) BS01 FUC ? N/A P11609 N/A
    1008 6cx5:A (2.4) BS01 FUC ? N/A P11609 31391251
    1009 6cx7:A (2.6) BS01 FUC ? N/A P11609 31391251
    1010 6cx9:A (2.36) BS01 FUC ? N/A P11609 31391251
    1011 6cxa:A (2.65) BS01 FUC ? N/A P11609 31391251
    1012 6cxe:A (2.05) BS01 FUC ? N/A P11609 31391251
    1013 6cxf:A (2.5) BS01 FUC ? N/A P11609 31391251
    1014 6ddt:A (2.1) BS01 FUC 3.2.1.25 GO:0004553 ... Q8K2I4 30552791
    1015 6ddu:A (2.668) BS01 FUC 3.2.1.25 GO:0004553 ... Q8K2I4 30552791
    1016 6dg5:B (2.516) BS01 FUC ? GO:0004896 ... P16297 30626941
    1017 6e0w:A (1.803) BS02 FUC ? N/A I7I026 N/A
    1018 6e0w:B (1.803) BS02 FUC ? N/A I7I026 N/A
    1019 6e69:A (2.33) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 31484779
    1020 6e69:B (2.33) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 31484779
    1021 6e69:C (2.33) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 31484779
    1022 6e69:D (2.33) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 31484779
    1023 6e7k:A (2.8) BS01 FUC 3.1.1.32
    3.1.1.34    		 GO:0004465 ... P06858 30559189
    1024 6eah:C (3.0) BS01 FUC ? GO:0019064 ... P03420 N/A
    1025 6eg0:B (2.9) BS01 FUC ? N/A Q9VMN9 30467080
    1026 6eg1:A (2.95) BS01 FUC ? N/A Q59DZ4 30467080
    1027 6eg1:B (2.95) BS01 FUC ? N/A Q9VMN6 30467080
    1028 6en5:A (1.75) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 29206036
    1029 6esy:B (2.8) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 29186056
    1030 6f5m:A (2.7) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 30084397
    1031 6f5m:B (2.7) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 30084397
    1032 6f9r:A (1.85) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 29476645
    1033 6f9t:A (1.6) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 29476645
    1034 6f9u:A (1.9) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 29476645
    1035 6fg7:A (1.9) BS01 FUC ? N/A Q9LSI9 29735985
    1036 6fj3:A (2.5) BS01 FUC ? GO:0004888 ... Q03431
    Q9V2J8    		 30455434
    1037 6fj3:A (2.5) BS02 FUC ? GO:0004888 ... Q03431
    Q9V2J8    		 30455434
    1038 6fx1:A (2.1) BS01 FUC ? GO:0046872 ... A0A3B6UEU4 29956878 PDBbind: -logKd/Ki=3.98, Kd=105uM
    1039 6fx1:A (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878 PDBbind: -logKd/Ki=3.98, Kd=105uM
    1040 6fx1:B (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878 PDBbind: -logKd/Ki=3.98, Kd=105uM
    1041 6fx1:B (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878 PDBbind: -logKd/Ki=3.98, Kd=105uM
    1042 6fx1:C (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1043 6fx1:C (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1044 6fx1:D (2.1) BS01 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1045 6fx1:D (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1046 6fx1:E (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1047 6fx1:E (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1048 6fx1:F (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1049 6fx1:F (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1050 6fx1:G (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1051 6fx1:G (2.1) BS04 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1052 6fx1:H (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1053 6fx1:H (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1054 6fx1:I (2.1) BS01 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1055 6fx1:I (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1056 6fx1:J (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1057 6fx1:K (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1058 6fx1:K (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1059 6fx1:L (2.1) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1060 6fx1:L (2.1) BS03 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1061 6fx2:A (1.7) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1062 6fx2:B (1.7) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1063 6fx3:A (1.7) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1064 6fx3:B (1.7) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 29956878
    1065 6gfe:L (1.8) BS01 FUC N/A N/A N/A 31023536
    1066 6gke:A (1.08) BS01 FUC ? GO:0030246 ... P18891 N/A
    1067 6gke:A (1.08) BS02 FUC ? GO:0030246 ... P18891 N/A
    1068 6gke:A (1.08) BS03 FUC ? GO:0030246 ... P18891 N/A
    1069 6gke:A (1.08) BS04 FUC ? GO:0030246 ... P18891 N/A
    1070 6gke:A (1.08) BS05 FUC ? GO:0030246 ... P18891 N/A
    1071 6h3t:I (2.836) BS01 FUC N/A N/A N/A 30787296
    1072 6h5w:A (1.37) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 30372620
    1073 6h5x:A (1.8) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 30372620
    1074 6h70:A (1.83) BS02 FUC ? N/A Q83884 30602609
    1075 6h70:B (1.83) BS02 FUC ? N/A Q83884 30602609
    1076 6h72:A (2.3) BS02 FUC ? N/A Q83884 30602609
    1077 6h72:B (2.3) BS02 FUC ? N/A Q83884 30602609
    1078 6hjd:A (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1079 6hjd:B (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1080 6hjd:C (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1081 6hjd:D (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1082 6hjd:E (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1083 6hjd:F (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1084 6hjd:G (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1085 6hjd:H (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1086 6hjd:I (1.54) BS01 FUC ? GO:0005515 ... P01556 31439922
    1087 6hmy:F (1.6) BS03 FUC ? GO:0005515 ... P01556 31439922
    1088 6hmy:I (1.6) BS02 FUC ? GO:0005515 ... P01556 31439922
    1089 6hmy:J (1.6) BS03 FUC ? GO:0005515 ... P01556 31439922
    1090 6hmy:J (1.6) BS05 FUC ? GO:0005515 ... P01556 31439922
    1091 6hp0:C (1.88) BS01 FUC 3.2.1.18 GO:0004308 ... C6KP13 31128993
    1092 6hur:A (1.297) BS03 FUC ? GO:0015768 ... A0A1S2VYK0 31489370
    1093 6hus:A (1.409) BS02 FUC ? GO:0015768 ... A0A1S2VYK0 31489370
    1094 6i0b:A (2.384) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 30851693
    1095 6i0c:A (2.675) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 30851693
    1096 6is5:A (2.501) BS01 FUC ? N/A Q66296 31711377
    1097 6is5:B (2.501) BS01 FUC ? N/A Q66296 31711377
    1098 6is5:C (2.501) BS01 FUC ? N/A Q66296 31711377
    1099 6is5:D (2.501) BS01 FUC ? N/A Q66296 31711377
    1100 6iuv:C (2.332) BS01 FUC N/A N/A N/A 30737282
    1101 6j15:C (2.6) BS01 FUC ? GO:0016020 ... Q15116 30952089
    1102 6j15:D (2.6) BS01 FUC ? GO:0016020 ... Q15116 30952089
    1103 6jbt:F (2.47) BS01 FUC ? GO:0016020 ... Q15116 30892132
    1104 6jbt:F (2.47) BS02 FUC ? GO:0016020 ... Q15116 30892132
    1105 6jjp:A (2.9) BS01 FUC N/A N/A N/A 31667366
    1106 6jjp:C (2.9) BS01 FUC ? GO:0016020 ... Q15116 31667366
    1107 6jjp:D (2.9) BS02 FUC N/A N/A N/A 31667366
    1108 6jjp:F (2.9) BS01 FUC ? GO:0016020 ... Q15116 31667366
    1109 6jk3:A (1.12) BS01 FUC ? GO:0046872 ... A0A3B6UEU4 37995778
    1110 6jk3:A (1.12) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 37995778
    1111 6jk3:B (1.12) BS01 FUC ? GO:0046872 ... A0A3B6UEU4 37995778
    1112 6jk3:B (1.12) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 37995778
    1113 6jk3:C (1.12) BS01 FUC ? GO:0046872 ... A0A3B6UEU4 37995778
    1114 6jk3:C (1.12) BS02 FUC ? GO:0046872 ... A0A3B6UEU4 37995778
    1115 6jla:C (2.4) BS01 FUC ? GO:0005509 ... Q99M71 31316816
    1116 6kpm:A (1.8) BS01 FUC 3.2.1.14 GO:0000272 ... G3JPF7 31548313
    1117 6kpn:A (2.1) BS01 FUC 3.2.1.14 GO:0000272 ... G3JPF7 31548313
    1118 6kpo:A (2.36) BS01 FUC 3.2.1.14 GO:0000272 ... G3JPF7 31548313
    1119 6kru:B (2.3) BS03 FUC ? N/A P01867 31878295
    1120 6lxi:A (2.5) BS01 FUC 3.2.1.18 GO:0004308 ... Q9IGQ6 33024040
    1121 6lxi:B (2.5) BS01 FUC 3.2.1.18 GO:0004308 ... Q9IGQ6 33024040
    1122 6miv:A (2.05) BS01 FUC ? N/A P11609 30556652
    1123 6miy:A (2.75) BS01 FUC ? N/A P11609 30556652
    1124 6miy:E (2.75) BS01 FUC ? N/A P11609 30556652
    1125 6mj4:A (2.0) BS01 FUC ? N/A P11609 30556652
    1126 6mj6:A (2.45) BS01 FUC ? N/A P11609 30556652
    1127 6mja:A (2.35) BS01 FUC ? N/A P11609 30556652
    1128 6mji:A (2.3) BS01 FUC ? N/A P11609 30556652
    1129 6mjj:A (1.93) BS01 FUC ? N/A P11609 30556652
    1130 6mjq:A (3.0) BS01 FUC ? N/A P11609 30556652
    1131 6n1b:A (1.3) BS01 FUC ? N/A G9YSP4 31182795
    1132 6nrq:B (1.8) BS01 FUC ? N/A Q9W4R3 30688651
    1133 6nrw:B (2.4) BS01 FUC ? N/A Q9VMN9 30688651
    1134 6ohe:A (3.14) BS01 FUC ? GO:0004560 ... A0A422MHI3 33277506
    1135 6ohe:B (3.14) BS01 FUC ? GO:0004560 ... A0A422MHI3 33277506
    1136 6ohe:C (3.14) BS01 FUC ? GO:0004560 ... A0A422MHI3 33277506
    1137 6ohe:D (3.14) BS01 FUC ? GO:0004560 ... A0A422MHI3 33277506
    1138 6ohy:B (4.1) BS01 FUC ? GO:0005198 ... Q1A234 31116986
    1139 6ohy:E (4.1) BS01 FUC ? GO:0005198 ... Q1A234 31116986
    1140 6ohy:F (4.1) BS01 FUC ? GO:0005198 ... Q1A234 31116986
    1141 6ojp:A (2.17) BS01 FUC ? N/A P11609 31391251
    1142 6olp:C (4.2) BS01 FUC N/A GO:0019031 ... N/A 31306470
    1143 6omg:A (2.1) BS01 FUC ? N/A P11609 N/A
    1144 6or4:A (2.1) BS02 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1145 6or4:B (2.1) BS02 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1146 6orf:A (1.7) BS01 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1147 6orf:B (1.7) BS01 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1148 6orh:A (1.62) BS02 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1149 6orh:A (1.62) BS03 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1150 6orh:B (1.62) BS02 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1151 6orh:B (1.62) BS03 FUC ? GO:0004560 ... A0A0H2US78 31266803
    1152 6p95:a (3.5) BS01 FUC ? GO:0019031 ... P08669 31398326
    1153 6p95:b (3.5) BS01 FUC ? GO:0019031 ... P08669 31398326
    1154 6p95:c (3.5) BS01 FUC ? GO:0019031 ... P08669 31398326
    1155 6pdl:C (2.7) BS01 FUC ? GO:0019031 ... O89343 23144952
    1156 6pdl:E (2.7) BS01 FUC ? GO:0019031 ... O89343 23144952
    1157 6pkg:A (2.8) BS01 FUC ? N/A F1QSF9 32109365
    1158 6pwu:A (6.2) BS01 FUC ? GO:0005198 ... Q71014 31931014
    1159 6qaa:A (1.897) BS01 FUC 3.1.1.8 GO:0004104 ... P06276 30864579
    1160 6qab:A (2.49) BS01 FUC 3.1.1.8 GO:0004104 ... P06276 30864579
    1161 6qae:A (2.487) BS01 FUC 3.1.1.8 GO:0004104 ... P06276 30864579
    1162 6qs1:B (1.8) BS02 FUC 3.4.15.1 GO:0006508 ... P12821 31072910
    1163 6r2w:L (1.25) BS11 FUC 3.4.21.21 GO:0005509 ... P08709 31801825
    1164 6r35:A (1.8) BS01 FUC ? GO:0030246 ... Q9HYN5 31146126
    1165 6r35:B (1.8) BS01 FUC ? GO:0030246 ... Q9HYN5 31146126
    1166 6r35:C (1.8) BS01 FUC ? GO:0030246 ... Q9HYN5 31146126
    1167 6r35:D (1.8) BS01 FUC ? GO:0030246 ... Q9HYN5 31146126
    1168 6r6v:A (2.5) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 31914836
    1169 6r6w:A (2.474) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 31914836
    1170 6rua:A (2.75) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 31914836
    1171 6rur:X (6.0) BS01 FUC ? N/A P27918 31507604
    1172 6rus:B (2.8) BS01 FUC ? N/A P27918 31507604
    1173 6ruv:X (6.15) BS01 FUC ? N/A P27918 31507604
    1174 6ruv:Y (6.15) BS01 FUC ? N/A P27918 31507604
    1175 6rv6:A (3.507) BS01 FUC ? N/A P27918 31507604
    1176 6rv6:A (3.507) BS02 FUC ? N/A P27918 31507604
    1177 6rv6:B (3.507) BS01 FUC ? N/A P27918 31507604
    1178 6rv6:B (3.507) BS03 FUC ? N/A P27918 31507604
    1179 6s08:A (2.03) BS01 FUC ? N/A P27918 31552043
    1180 6s08:B (2.03) BS02 FUC ? N/A P27918 31552043
    1181 6s0b:A (2.312) BS01 FUC ? N/A P27918 31552043
    1182 6sam:A (2.5) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 32380361
    1183 6sam:A (2.5) BS02 FUC 3.1.1.8 GO:0001540 ... P06276 32380361
    1184 6sej:A (3.501) BS01 FUC ? N/A P27918 31507604
    1185 6sej:B (3.501) BS01 FUC ? N/A P27918 31507604
    1186 6sma:A (2.59) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 32176480
    1187 6sma:B (2.59) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 32176480
    1188 6sma:C (2.59) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 32176480
    1189 6t9a:A (2.0) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 32208534
    1190 6t9a:A (2.0) BS03 FUC ? GO:0030246 ... A0A0S4TLR1 32208534
    1191 6t9a:B (2.0) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 32208534
    1192 6t9a:C (2.0) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 32208534
    1193 6t9a:C (2.0) BS03 FUC ? GO:0030246 ... A0A0S4TLR1 32208534
    1194 6t9p:A (2.7) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 32639532
    1195 6t9s:A (2.7) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 32639532
    1196 6tid:AAA (1.614) BS01 FUC ? N/A B4EH86 31936166
    1197 6tig:AAA (1.9) BS01 FUC ? N/A B4EH86 31936166
    1198 6tig:AAA (1.9) BS02 FUC ? N/A B4EH86 31936166
    1199 6tig:BBB (1.9) BS01 FUC ? N/A B4EH86 31936166
    1200 6tig:BBB (1.9) BS02 FUC ? N/A B4EH86 31936166
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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