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BioLiP Library
Download all results in tab-seperated text for 1605 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 5ele:J (1.6) BS02 FUC ? GO:0005515 ... P01556 27082955
    802 5ele:J (1.6) BS03 FUC ? GO:0005515 ... P01556 27082955
    803 5elf:A (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    804 5elf:B (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    805 5elf:D (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    806 5elf:E (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    807 5elf:F (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    808 5elf:G (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    809 5elf:G (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955
    810 5elf:H (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    811 5elf:I (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    812 5elf:I (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    813 5elf:J (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    814 5elf:J (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955
    815 5eok:A (2.8) BS02 FUC 3.4.21.27 GO:0004252 ... P03951 27006387
    816 5f7m:A (2.72) BS02 FUC ? N/A O52269 26764597
    817 5f7m:B (2.72) BS01 FUC ? N/A O52269 26764597
    818 5f7n:A (2.28) BS01 FUC ? N/A O52269 26764597
    819 5f7n:B (2.28) BS01 FUC ? N/A O52269 26764597
    820 5f7w:A (2.81) BS03 FUC ? N/A O52269 26764597
    821 5f7w:B (2.81) BS02 FUC ? N/A O52269 26764597
    822 5f7y:A (2.44) BS02 FUC ? N/A O52269 26764597
    823 5f7y:B (2.44) BS02 FUC ? N/A O52269 26764597
    824 5f8r:A (2.44) BS02 FUC ? N/A O52269
    Q6DSZ5    		 26764597
    825 5f8r:B (2.44) BS02 FUC ? N/A O52269
    Q6DSZ5    		 26764597
    826 5f93:A (2.99) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    827 5f93:B (2.99) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    828 5f93:E (2.99) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    829 5f93:G (2.99) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    830 5f97:A (2.62) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    831 5f97:B (2.62) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    832 5f97:C (2.62) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    833 5f97:D (2.62) BS02 FUC ? N/A O52269
    Q6DSX7    		 26764597
    834 5f9a:A (2.44) BS02 FUC ? N/A O52269
    Q6DT10    		 26764597
    835 5f9d:A (2.59) BS02 FUC ? N/A O52269
    Q6DT10    		 26764597
    836 5fi9:B (2.543) BS01 FUC 3.1.4.12
    3.1.4.3    		 GO:0001778 ... Q04519 27435900
    837 5fkp:A (1.8) BS02 FUC ? N/A P11609 27006394
    838 5fob:A (2.6) BS01 FUC ? GO:0004866 ... P01024 27013439
    839 5fuu:D (4.19) BS01 FUC ? GO:0005198 ... Q6BC19 26941313
    840 5fuu:F (4.19) BS01 FUC ? GO:0005198 ... Q6BC19 26941313
    841 5hf6:B (2.3) BS01 FUC 3.1.1.7 GO:0001507 ... P22303 27191504
    842 5hqn:B (2.6) BS01 FUC 3.1.4.12
    3.1.4.3    		 GO:0004767 ... Q04519 27435900
    843 5hy9:B (2.7) BS01 FUC ? N/A P01857 28985438
    844 5hza:A (1.35) BS01 FUC ? N/A Q5F4T5 26889023
    845 5hza:B (1.35) BS01 FUC ? N/A Q5F4T5 26889023
    846 5hzb:A (1.553) BS01 FUC ? N/A Q5F4T5 26889023
    847 5hzb:B (1.553) BS02 FUC ? N/A Q5F4T5 26889023
    848 5i4d:A (1.75) BS03 FUC ? GO:0005576 ... Q2G0X7 N/A
    849 5i4d:B (1.75) BS02 FUC ? GO:0005576 ... Q2G0X7 N/A
    850 5i8o:H (1.8) BS02 FUC N/A N/A N/A N/A
    851 5iyp:A (1.27) BS01 FUC ? N/A D0QJ68 N/A
    852 5iyp:B (1.27) BS01 FUC ? N/A D0QJ68 N/A
    853 5iyq:A (1.41) BS01 FUC ? N/A D0QJ68 N/A
    854 5iyq:B (1.41) BS01 FUC ? N/A D0QJ68 N/A
    855 5iyr:A (1.54) BS01 FUC ? N/A D0QJ68 N/A
    856 5iyr:B (1.54) BS01 FUC ? N/A D0QJ68 N/A
    857 5iyw:A (1.41) BS01 FUC ? N/A D0QJ68 N/A
    858 5iyw:B (1.41) BS01 FUC ? N/A D0QJ68 N/A
    859 5j35:A (1.47) BS01 FUC ? N/A K4LM89 N/A
    860 5j35:A (1.47) BS02 FUC ? N/A K4LM89 N/A
    861 5j35:B (1.47) BS01 FUC ? N/A K4LM89 N/A
    862 5j35:B (1.47) BS02 FUC ? N/A K4LM89 N/A
    863 5j3o:A (1.47) BS01 FUC ? N/A K4LM89 N/A
    864 5j3o:A (1.47) BS02 FUC ? N/A K4LM89 N/A
    865 5j3o:B (1.47) BS01 FUC ? N/A K4LM89 N/A
    866 5j3o:B (1.47) BS02 FUC ? N/A K4LM89 N/A
    867 5jih:A (1.663) BS02 FUC ? N/A P01857 28528777
    868 5k6w:A (3.5) BS01 FUC ? N/A Q3UH53 27644106
    869 5k6w:B (3.5) BS01 FUC ? N/A Q3UH53 27644106
    870 5k6x:A (2.7) BS01 FUC ? N/A Q6V4S5 27644106
    871 5k6y:A (3.2) BS01 FUC ? N/A Q6V4S5 27644106
    872 5kqv:F (4.4) BS02 FUC 2.7.10.1 N/A P06213 23302862
    873 5l9y:A (1.88) BS01 FUC 3.2.1.166 GO:0016020 ... Q9Y251 28581485
    874 5la4:A (1.9) BS01 FUC 3.2.1.166 GO:0004566 ... Q9Y251 28581485
    875 5la7:A (1.94) BS01 FUC 3.2.1.166 GO:0004566 ... Q9Y251 28581485
    876 5lbv:B (2.2) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... A0A024B7W1 27338953
    877 5lcv:B (2.64) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... A0A024B7W1 27338953
    878 5lf5:A (3.8) BS01 FUC ? N/A P20917 27922006
    879 5lfe:A (2.3) BS01 FUC ? N/A M4QNL3 N/A
    880 5lfe:B (2.3) BS01 FUC ? N/A M4QNL3 N/A
    881 5lkc:A (1.81) BS01 FUC ? N/A A0A0E4B1P1 28505592
    882 5lkc:B (1.81) BS01 FUC ? N/A A0A0E4B1P1 28505592
    883 5lkg:A (1.51) BS01 FUC ? N/A A0A0E4B1P1 28505592
    884 5lkg:A (1.51) BS02 FUC ? N/A A0A0E4B1P1 28505592
    885 5lkg:B (1.51) BS01 FUC ? N/A A0A0E4B1P1 28505592
    886 5lkk:A (1.49) BS01 FUC ? N/A A0A0E4B1P1 N/A
    887 5lkk:A (1.49) BS02 FUC ? N/A A0A0E4B1P1 N/A
    888 5lkk:B (1.49) BS01 FUC ? N/A A0A0E4B1P1 N/A
    889 5lkk:B (1.49) BS02 FUC ? N/A A0A0E4B1P1 N/A
    890 5lkr:A (2.52) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 27908752
    891 5m5e:B (2.3) BS01 FUC ? GO:0004896 ... P14784 28405498
    892 5m8l:A (2.35) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    893 5m8m:A (2.65) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    894 5m8m:B (2.65) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    895 5m8m:C (2.65) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    896 5m8m:D (2.65) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    897 5m8n:A (2.6) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    898 5m8n:C (2.6) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    899 5m8n:D (2.6) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    900 5m8p:A (2.8) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    901 5m8q:A (2.85) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    902 5m8q:C (2.85) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    903 5m8q:D (2.85) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    904 5m8r:A (2.4) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    905 5m8r:B (2.4) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    906 5m8r:C (2.4) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    907 5m8r:D (2.4) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    908 5m8s:A (2.2) BS01 FUC 1.14.18.- GO:0016491 ... P17643 32019241
    909 5m8s:B (2.2) BS01 FUC 1.14.18.- GO:0016491 ... P17643 32019241
    910 5m8s:D (2.2) BS01 FUC 1.14.18.- GO:0016491 ... P17643 32019241
    911 5m8t:A (2.35) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    912 5m8t:B (2.35) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    913 5m8t:C (2.35) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    914 5m8t:D (2.35) BS01 FUC 1.14.18.- GO:0016491 ... P17643 28661582
    915 5mw7:A (2.8) BS01 FUC ? GO:0005509 ... Q9Y219 28572448
    916 5mwb:A (1.86) BS02 FUC ? GO:0005509 ... Q04721 28572448
    917 5mwf:B (2.8) BS01 FUC ? GO:0007154 ... Q9Y219 28572448
    918 5mwf:C (2.8) BS01 FUC ? GO:0007154 ... Q9Y219 28572448
    919 5mwf:D (2.8) BS01 FUC ? GO:0007154 ... Q9Y219 28572448
    920 5mwf:E (2.8) BS01 FUC ? GO:0007154 ... Q9Y219 28572448
    921 5mwf:F (2.8) BS01 FUC ? GO:0007154 ... Q9Y219 28572448
    922 5mxg:A (2.2) BS02 FUC ? GO:0046872 ... C7BLE4 28806750
    923 5mxg:A (2.2) BS03 FUC ? GO:0046872 ... C7BLE4 28806750
    924 5mxg:A (2.2) BS04 FUC ? GO:0046872 ... C7BLE4 28806750
    925 5n09:A (3.9) BS01 FUC ? GO:0046983 ... A0A0B4SHY9 28534525
    926 5n09:B (3.9) BS01 FUC ? GO:0046983 ... A0A0B4SHY9 28534525
    927 5n0a:A (3.9) BS01 FUC ? GO:0046983 ... A0A0B4SHY9 28534525
    928 5n0a:B (3.9) BS01 FUC ? GO:0046983 ... A0A0B4SHY9 28534525
    929 5n7m:A (1.73) BS02 FUC ? N/A Q83884 28505592
    930 5n7m:B (1.73) BS02 FUC ? N/A Q83884 28505592
    931 5nn0:A (2.1) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 29227101
    932 5nn0:A (2.1) BS02 FUC 3.1.1.8 GO:0001540 ... P06276 29227101
    933 5o5r:A (1.65) BS01 FUC 3.4.17.21 GO:0004180 ... Q04609 N/A
    934 5o7u:A (1.15) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    935 5o7u:A (1.15) BS02 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    936 5o7u:B (1.15) BS02 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    937 5o7u:B (1.15) BS03 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    938 5o7v:A (1.28) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    939 5o7v:A (1.28) BS02 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    940 5o7v:B (1.28) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    941 5o7v:B (1.28) BS02 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    942 5o7w:A (1.35) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    943 5o7w:A (1.35) BS02 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    944 5o7w:B (1.35) BS02 FUC ? GO:0030246 ... A0A0S4TLR1 29812892
    945 5qj2:B (2.82) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 30613322
    946 5qj2:G (2.82) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 30613322
    947 5t3x:B (3.9) BS01 FUC ? GO:0005198 ... Q2N0S6 27617431
    948 5t3z:G (3.5) BS01 FUC ? GO:0019031 ... Q2N0S6 27617431
    949 5t54:A (1.65) BS01 FUC ? GO:0005576 ... P86993 27973758 PDBbind: -logKd/Ki=9.06, Kd=0.87nM
    950 5t54:B (1.65) BS01 FUC ? GO:0005576 ... P86993 27973758
    951 5tip:A (2.0) BS03 FUC ? GO:0005198 ... P30328 29255015
    952 5tip:B (2.0) BS02 FUC ? GO:0005198 ... P30328 29255015
    953 5tip:C (2.0) BS03 FUC ? GO:0005198 ... P30328 29255015
    954 5tip:D (2.0) BS02 FUC ? GO:0005198 ... P30328 29255015
    955 5tiq:A (2.537) BS03 FUC ? GO:0005198 ... P30328 29255015
    956 5tiq:B (2.537) BS03 FUC ? GO:0005198 ... P30328 29255015
    957 5tjo:A (1.57) BS01 FUC 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 28575295
    958 5tw2:A (1.75) BS01 FUC ? N/A P11609 28655912
    959 5uk5:A (2.506) BS06 FUC ? GO:0005509 ... Q07008 28254785
    960 5uk5:B (2.506) BS01 FUC ? GO:0005509 ... Q63722 28254785
    961 5uk5:B (2.506) BS02 FUC ? GO:0005509 ... Q63722 28254785
    962 5ury:A (2.098) BS01 FUC ? N/A Q13467 28377511
    963 5urz:A (2.202) BS01 FUC ? N/A Q13467 28377511
    964 5vcj:A (3.16) BS01 FUC ? N/A P11609 30656346
    965 5ven:A (1.69) BS01 FUC 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    966 5ven:B (1.69) BS01 FUC 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    967 5veo:A (1.53) BS01 FUC 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    968 5vk2:b (3.201) BS01 FUC ? GO:0019031 ... P08669 28572385
    969 5w6s:A (2.263) BS01 FUC ? N/A G3M190 31325442
    970 5w7b:A (1.9) BS01 FUC 3.1.1.77 GO:0050528 ... O18823 29343645
    971 5w7b:B (1.9) BS01 FUC 3.1.1.77 GO:0050528 ... O18823 29343645
    972 5wt9:G (2.401) BS01 FUC ? GO:0016020 ... Q15116 28165004
    973 5xmh:A (2.8) BS02 FUC ? N/A P0DOX5 29523691
    974 5y2z:J (2.67) BS01 FUC ? N/A O95970 29670100
    975 5y32:B (2.701) BS01 FUC 3.2.2.6 N/A P59823 25908590
    976 5zho:A (1.401) BS01 FUC ? N/A Q82040 29593033
    977 5zv5:A (2.1) BS01 FUC ? N/A A0A0E3X5I8 30333166
    978 5zv5:B (2.1) BS01 FUC ? N/A A0A0E3X5I8 30333166
    979 5zv5:B (2.1) BS02 FUC ? N/A A0A0E3X5I8 30333166
    980 5zv7:A (1.95) BS01 FUC ? N/A A0A0E3X5I8 30333166
    981 5zv7:A (1.95) BS02 FUC ? N/A A0A0E3X5I8 30333166
    982 5zv7:B (1.95) BS01 FUC ? N/A A0A0E3X5I8 30333166
    983 6a5d:A (1.401) BS01 FUC ? GO:0005515 ... Q9FKT1 31291642
    984 6a5d:B (1.401) BS01 FUC ? GO:0005515 ... Q9FKT1 31291642
    985 6a87:A (2.41) BS01 FUC ? N/A A0A384E107 30913288
    986 6a87:C (2.41) BS01 FUC ? N/A A0A384E107 30913288
    987 6a87:D (2.41) BS01 FUC ? N/A A0A384E107 30913288
    988 6a87:D (2.41) BS02 FUC ? N/A A0A384E107 30913288
    989 6a87:E (2.41) BS01 FUC ? N/A A0A384E107 30913288
    990 6a87:E (2.41) BS02 FUC ? N/A A0A384E107 30913288
    991 6a87:F (2.41) BS01 FUC ? N/A A0A384E107 30913288
    992 6a87:F (2.41) BS02 FUC ? N/A A0A384E107 30913288
    993 6bga:B (2.307) BS01 FUC ? GO:0006955 ... Q31163 30021852
    994 6c01:A (2.3) BS01 FUC 3.1.4.1
    3.6.1.9    		 GO:0002276 ... O14638 29717535
    995 6c01:B (2.3) BS01 FUC 3.1.4.1
    3.6.1.9    		 GO:0002276 ... O14638 29717535
    996 6c02:A (1.942) BS01 FUC 3.1.4.1
    3.6.1.9    		 GO:0002276 ... O14638 29717535
    997 6c5m:A (2.45) BS01 FUC ? N/A P11609 31391251
    998 6c69:A (1.937) BS01 FUC ? N/A P11609 31391251
    999 6c6c:A (2.08) BS01 FUC ? N/A P11609 31391251
    1000 6c6f:A (1.67) BS01 FUC ? N/A P11609 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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