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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1605 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b0f:A (3.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 9651152
    2 1cly:H (2.5) BS02 FUC N/A N/A N/A 7664109
    3 1clz:H (2.8) BS02 FUC ? N/A P03987 7664109
    4 1cxp:C (1.8) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 10766826
    5 1cxp:D (1.8) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 10766826
    6 1d2v:D (1.75) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 10766826
    7 1d5l:C (1.9) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 11705390
    8 1d5l:D (1.9) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 11705390
    9 1dnw:C (1.9) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 11705390
    10 1dva:L (3.0) BS03 FUC 3.4.21.21 GO:0005509 ... P08709 10761907
    11 1dva:M (3.0) BS01 FUC 3.4.21.21 GO:0005509 ... P08709 10761907
    12 1elv:A (1.7) BS01 FUC 3.4.21.42 GO:0004252 ... P09871 10775260
    13 1fak:L (2.1) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 9925787
    14 1fc1:A (2.9) BS02 FUC ? N/A P01857 7236608
    15 1fe8:A (2.03) BS01 FUC ? N/A P04275 11098050
    16 1ff7:A (-1.00) BS01 FUC 3.4.21.21 GO:0005509 ... P08709 10353820
    17 1ffm:A (-1.00) BS01 FUC 3.4.21.21 GO:0005509 ... P08709 10353820
    18 1fuj:A (2.2) BS02 FUC 3.4.21.76 GO:0004252 ... P24158 8757293
    19 1fuj:B (2.2) BS01 FUC 3.4.21.76 GO:0004252 ... P24158 8757293
    20 1fuj:C (2.2) BS01 FUC 3.4.21.76 GO:0004252 ... P24158 8757293
    21 1fuj:D (2.2) BS01 FUC 3.4.21.76 GO:0004252 ... P24158 8757293
    22 1g1r:A (3.4) BS02 FUC ? N/A P16109 11081633
    23 1g1r:B (3.4) BS03 FUC ? N/A P16109 11081633
    24 1g1s:A (1.9) BS04 FUC ? N/A P16109 11081633
    25 1g1s:B (1.9) BS04 FUC ? N/A P16109 11081633
    26 1g1t:A (1.5) BS03 FUC ? N/A P16581 11081633
    27 1g7p:A (1.5) BS02 FUC ? N/A P01901 12083519
    28 1g7q:A (1.6) BS02 FUC ? N/A P01901 12083518
    29 1g82:A (2.6) BS01 FUC ? GO:0008083 ... P31371 11223514
    30 1gc1:G (2.5) BS01 FUC ? GO:0019031 ... P04578 9641677
    31 1gpz:A (2.9) BS01 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    32 1gpz:A (2.9) BS02 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    33 1gpz:B (2.9) BS01 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    34 1gsl:A (2.0) BS02 FUC ? GO:0030246 ... P24146 8478943
    35 1gsl:A (2.0) BS03 FUC ? GO:0030246 ... P24146 8478943
    36 1gsl:A (2.0) BS04 FUC ? GO:0030246 ... P24146 8478943
    37 1gz9:A (1.7) BS03 FUC ? GO:0030246 ... P83410 12139934
    38 1gzt:A (1.3) BS01 FUC ? GO:0030246 ... Q9HYN5 12415289 MOAD: ic50=0.25mM
    39 1gzt:B (1.3) BS01 FUC ? GO:0030246 ... Q9HYN5 12415289 MOAD: ic50=0.25mM
    40 1gzt:C (1.3) BS01 FUC ? GO:0030246 ... Q9HYN5 12415289 MOAD: ic50=0.25mM
    41 1gzt:D (1.3) BS01 FUC ? GO:0030246 ... Q9HYN5 12415289 MOAD: ic50=0.25mM
    42 1h1b:A (2.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 12190311
    43 1h1b:B (2.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 12190311
    44 1i1a:A (2.8) BS01 FUC ? N/A P13599 11336709
    45 1i1a:C (2.8) BS01 FUC ? N/A P20760 11336709
    46 1igr:A (2.6) BS01 FUC 2.7.10.1 N/A P08069 9690478
    47 1inh:B (2.4) BS03 FUC 3.2.1.18 GO:0004308 ... P06820 7650674
    48 1iuc:A (2.24) BS03 FUC ? GO:0030246 ... P18891 14503859
    49 1k12:A (1.9) BS01 FUC ? GO:0001868 ... Q7SIC1 12091873
    50 1kbg:H (2.2) BS02 FUC ? N/A P01901 10023770
    51 1kpu:A (1.5) BS02 FUC ? N/A P01901 N/A
    52 1kpv:A (1.71) BS02 FUC ? N/A P01901 N/A
    53 1led:A (2.0) BS02 FUC ? GO:0030246 ... P24146 8478943
    54 1led:A (2.0) BS03 FUC ? GO:0030246 ... P24146 8478943
    55 1led:A (2.0) BS04 FUC ? GO:0030246 ... P24146 8478943
    56 1lek:A (2.15) BS02 FUC ? N/A P01901 11994422
    57 1lgb:A (3.3) BS02 FUC ? GO:0005515 ... P04122 8069634
    58 1lgc:C (2.8) BS02 FUC ? GO:0005515 ... P04122 8069634
    59 1lk2:A (1.35) BS02 FUC ? N/A P01901 14978103
    60 1lk9:B (1.53) BS01 FUC 4.4.1.4 GO:0005773 ... Q01594 12235163
    61 1lzj:A (1.32) BS01 FUC 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 12198488
    62 1mhl:C (2.25) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    63 1mhl:D (2.25) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    64 1mmx:A (1.8) BS01 FUC 5.1.3.3 GO:0003824 ... Q9ZB17 12218067
    65 1mmx:B (1.8) BS01 FUC 5.1.3.3 GO:0003824 ... Q9ZB17 12218067
    66 1n47:A (2.7) BS01 FUC ? GO:0030246 ... P56625 12586347
    67 1n47:B (2.7) BS01 FUC ? GO:0030246 ... P56625 12586347
    68 1oan:A (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... P12823 12759475
    69 1oan:B (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... P12823 12759475
    70 1ofz:A (1.5) BS04 FUC ? GO:0030246 ... P18891 12732625
    71 1ofz:A (1.5) BS06 FUC ? GO:0030246 ... P18891 12732625
    72 1ofz:B (1.5) BS02 FUC ? GO:0030246 ... P18891 12732625
    73 1ofz:B (1.5) BS04 FUC ? GO:0030246 ... P18891 12732625
    74 1op0:A (2.0) BS01 FUC 3.4.21.- GO:0004252 ... Q9I8X1 15632114
    75 1oxc:A (1.2) BS02 FUC ? GO:0030246 ... Q9HYN5 12909014
    76 1oxc:B (1.2) BS01 FUC ? GO:0030246 ... Q9HYN5 12909014
    77 1oxc:C (1.2) BS01 FUC ? GO:0030246 ... Q9HYN5 12909014
    78 1oxc:D (1.2) BS03 FUC ? GO:0030246 ... Q9HYN5 12909014
    79 1p0i:A (2.0) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 12869558
    80 1p0m:A (2.38) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 12869558
    81 1p0p:A (2.3) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 12869558
    82 1p0q:A (2.43) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 12869558
    83 1p8j:G (2.6) BS03 FUC 3.4.21.75 GO:0004252 ... P23188 12794637
    84 1ppf:E (1.8) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 3640709
    85 1ppg:E (2.3) BS02 FUC 3.4.21.37 GO:0000122 ... P08246 3391280
    86 1ppg:E (2.3) BS03 FUC 3.4.21.37 GO:0000122 ... P08246 3391280
    87 1qlr:B (2.83) BS01 FUC N/A N/A N/A 11086081
    88 1qlr:D (2.83) BS01 FUC N/A N/A N/A 11086081
    89 1qot:A (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    90 1qot:B (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    91 1qot:C (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    92 1qot:D (3.0) BS02 FUC ? GO:0030246 ... Q9FVF8 10966800
    93 1qpa:B (1.8) BS01 FUC 1.11.1.14 GO:0000302 ... P11542 10024453
    94 1r7u:A (1.61) BS02 FUC 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 12972418
    95 1s3k:H (1.9) BS02 FUC N/A N/A N/A 15223322
    96 1s3k:L (1.9) BS01 FUC N/A N/A N/A 15223322
    97 1sl5:A (1.8) BS01 FUC ? N/A Q9NNX6 15195147
    98 1sl6:A (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    99 1sl6:B (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    100 1sl6:C (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    101 1sl6:D (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    102 1sl6:E (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    103 1sl6:F (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    104 1tcr:B (2.5) BS01 FUC N/A N/A N/A 8824178
    105 1urk:A (-1.00) BS01 FUC 3.4.21.73 N/A P00749 8161544
    106 1uvq:B (1.8) BS02 FUC ? GO:0006955 ... P01920 14769912
    107 1uz8:A (1.8) BS02 FUC N/A N/A N/A 15242599 PDBbind: -logKd/Ki=4.96, Kd=11uM
    108 1uz8:L (1.8) BS02 FUC N/A N/A N/A 15242599
    109 1uzv:A (1.0) BS03 FUC ? GO:0030246 ... Q9HYN5 15573375 MOAD: Kd=0.6667uM
    110 1uzv:B (1.0) BS03 FUC ? GO:0030246 ... Q9HYN5 15573375 MOAD: Kd=0.6667uM
    111 1uzv:C (1.0) BS03 FUC ? GO:0030246 ... Q9HYN5 15573375 MOAD: Kd=0.6667uM
    112 1uzv:D (1.0) BS03 FUC ? GO:0030246 ... Q9HYN5 15573375 MOAD: Kd=0.6667uM
    113 1w0y:L (2.5) BS01 FUC 3.4.21.21 GO:0005509 ... P08709 15664864
    114 1w2k:L (3.0) BS01 FUC 3.4.21.21 GO:0005509 ... P08709 15664864
    115 1w8f:A (1.05) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    116 1w8f:B (1.05) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    117 1w8f:C (1.05) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    118 1w8f:D (1.05) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    119 1w8h:A (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    120 1w8h:B (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    121 1w8h:C (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    122 1w8h:D (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    123 1wqv:L (2.5) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15504346
    124 1wss:L (2.6) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 16510984
    125 1wt1:A (1.55) BS01 FUC 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 15475562
    126 1wtg:L (2.2) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15607748
    127 1wun:L (2.4) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15629154
    128 1wv7:L (2.7) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15629154
    129 1xlw:A (2.1) BS02 FUC 3.1.1.8 GO:0001540 ... P06276 15667209
    130 1ykb:A (2.6) BS01 FUC ? GO:0005125 ... Q9GZX6 15983417
    131 1ywh:A (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    132 1ywh:E (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    133 1ywh:G (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    134 1ywh:I (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    135 1ywh:K (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    136 1ywh:O (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    137 1zhn:A (2.8) BS01 FUC ? N/A P11609 16002697
    138 1zj2:A (1.69) BS02 FUC 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    139 1zj3:A (1.69) BS02 FUC 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    140 2a2q:L (1.8) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 16757484
    141 2aer:L (1.87) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 16757484
    142 2bs5:A (2.1) BS01 FUC ? GO:0030246 ... A0A0S4TLR1 15923179
    143 2bs5:A (2.1) BS02 FUC ? GO:0030246 ... A0A0S4TLR1 15923179
    144 2bs6:A (1.8) BS01 FUC ? N/A Q8XXK6 15923179
    145 2bs6:A (1.8) BS02 FUC ? N/A Q8XXK6 15923179
    146 2bs6:A (1.8) BS03 FUC ? N/A Q8XXK6 15923179
    147 2bs6:B (1.8) BS01 FUC ? N/A Q8XXK6 15923179
    148 2bs6:B (1.8) BS02 FUC ? N/A Q8XXK6 15923179
    149 2bs6:B (1.8) BS03 FUC ? N/A Q8XXK6 15923179
    150 2bs6:C (1.8) BS01 FUC ? N/A Q8XXK6 15923179
    151 2bs6:C (1.8) BS02 FUC ? N/A Q8XXK6 15923179
    152 2bs6:C (1.8) BS03 FUC ? N/A Q8XXK6 15923179
    153 2c4f:L (1.72) BS03 FUC 3.4.21.21 GO:0005509 ... P08709 16289811
    154 2dwa:A (2.07) BS01 FUC 3.4.21.- GO:0005576 ... P24627 N/A
    155 2ead:B (1.89) BS03 FUC 3.2.1.63 GO:0004560 ... Q6JV24 17459873
    156 2eae:A (1.8) BS02 FUC 3.2.1.63 GO:0004560 ... Q6JV24 17459873
    157 2ec9:L (2.0) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 17505107
    158 2erj:B (3.0) BS01 FUC ? GO:0004896 ... P14784 16477002
    159 2erj:B (3.0) BS02 FUC ? GO:0004896 ... P14784 16477002
    160 2erj:F (3.0) BS01 FUC ? GO:0004896 ... P14784 16477002
    161 2fir:L (2.0) BS01 FUC 3.4.21.21 GO:0005509 ... P08709 16757484
    162 2fo4:A (2.7) BS02 FUC ? N/A Q3UBW0 17067310
    163 2gys:B (2.7) BS01 FUC ? GO:0004896 ... P32927 16754968
    164 2ha0:A (2.2) BS01 FUC 3.1.1.7 GO:0001919 ... P21836 16837465
    165 2iul:A (2.01) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 17042482
    166 2j1g:B (1.95) BS01 FUC ? N/A Q15485 17215869
    167 2j1t:A (1.6) BS01 FUC ? N/A A0A0H2US34 16987809
    168 2j1u:A (1.8) BS01 FUC ? N/A A0A0H2US34 16987809
    169 2j1v:A (1.45) BS01 FUC ? N/A A0A0H2US34 16987809
    170 2j3f:B (2.8) BS01 FUC ? N/A Q15485 17215869
    171 2j4c:A (2.75) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 17355286
    172 2jdh:A (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286 PDBbind: -logKd/Ki=6.51, Kd=0.31uM
    173 2jdh:B (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286 PDBbind: -logKd/Ki=6.51, Kd=0.31uM
    174 2jdh:C (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286
    175 2jdh:D (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286
    176 2jdk:A (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286 PDBbind: -logKd/Ki=6.54, Kd=0.29uM
    177 2jdk:B (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286 PDBbind: -logKd/Ki=6.54, Kd=0.29uM
    178 2jdk:C (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286
    179 2jdk:D (1.1) BS01 FUC ? GO:0030246 ... Q9HYN5 17623286
    180 2jdm:A (1.7) BS03 FUC ? GO:0030246 ... Q9HYN5 17540045
    181 2jdn:A (1.3) BS03 FUC ? GO:0030246 ... Q9HYN5 17540045
    182 2kmb:1 (2.0) BS02 FUC ? N/A P19999 9033386
    183 2kmb:2 (2.0) BS02 FUC ? N/A P19999 9033386
    184 2kmb:3 (2.0) BS01 FUC ? N/A P19999 9033386
    185 2liq:A (-1.00) BS02 FUC ? GO:0030246 ... B3GA02 22615566 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    186 2nyk:A (2.1) BS01 FUC ? N/A Q6XK79 17537914
    187 2nzy:A (2.05) BS01 FUC 2.4.1.152 GO:0006486 ... O30511 17251184
    188 2nzy:B (2.05) BS01 FUC 2.4.1.152 GO:0006486 ... O30511 17251184
    189 2nzy:C (2.05) BS01 FUC 2.4.1.152 GO:0006486 ... O30511 17251184
    190 2o2l:D (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    191 2o2l:E (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    192 2o2l:E (2.53) BS02 FUC ? GO:0005576 ... P0CK94 17586525
    193 2o2l:F (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    194 2o2l:F (2.53) BS02 FUC ? GO:0005576 ... P0CK94 17586525
    195 2o2l:G (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    196 2o2l:H (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    197 2o2l:H (2.53) BS02 FUC ? GO:0005576 ... P0CK94 17586525
    198 2o2l:I (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    199 2o2l:J (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    200 2o2l:K (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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