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BioLiP Library
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2cle:A (1.5) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 17559195 MOAD: Kd=280uM
    PDBbind: -logKd/Ki=3.55, Kd=280uM
    2 2clf:A (1.7) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 17559195 MOAD: Kd=280uM
    PDBbind: -logKd/Ki=3.55, Kd=280uM
    3 2clf:B (1.7) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 17559195 MOAD: Kd=280uM
    PDBbind: -logKd/Ki=3.55, Kd=280uM
    4 2clf:B (1.7) BS02 F6F 4.2.1.20 GO:0000162 ... P0A2K1 17559195 MOAD: Kd=280uM
    PDBbind: -logKd/Ki=3.55, Kd=280uM
    5 2clm:A (1.51) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 17559232 PDBbind: -logKd/Ki=3.55, Kd=280uM
    6 2clm:B (1.51) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 17559232 PDBbind: -logKd/Ki=3.55, Kd=280uM
    7 4kkx:A (1.77) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 23952479
    8 4wx2:A (1.75) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    9 4wx2:A (1.75) BS02 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    10 4wx2:B (1.75) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    11 4wx2:B (1.75) BS03 F6F 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    12 4y6g:A (1.65) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    13 4y6g:B (1.65) BS02 F6F 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    14 4zqc:A (1.54) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    15 4zqc:A (1.54) BS02 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    16 4zqc:B (1.54) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    17 4zqc:B (1.54) BS03 F6F 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    18 5bw6:A (1.82) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    19 7ku9:A (1.4) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 N/A
    20 7ku9:A (1.4) BS02 F6F 4.2.1.20 GO:0000162 ... P00929 N/A
    21 7ku9:B (1.4) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    22 7ku9:B (1.4) BS03 F6F 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    23 7ly8:A (1.55) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 N/A
    24 7ly8:A (1.55) BS02 F6F 4.2.1.20 GO:0000162 ... P00929 N/A
    25 7ly8:B (1.55) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    26 7ly8:B (1.55) BS03 F6F 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    27 7m2l:A (1.6) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 N/A
    28 7m2l:B (1.6) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    29 7m3s:A (1.55) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 N/A
    30 7m3s:B (1.55) BS02 F6F 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    31 7me8:B (1.6) BS02 F6F 4.2.1.20 GO:0000162 ... P0A2K1 N/A

    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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