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BioLiP Library
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2vg2:A (1.95) BS01 DPO 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    2 2vg2:B (1.95) BS01 DPO 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    3 2vg2:C (1.95) BS02 DPO 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    4 3d40:A (1.53) BS01 DPO 2.7.4.26 GO:0004349 ... Q56187 18701452
    5 4rnq:A (2.47) BS06 DPO 4.2.3.61 GO:0000287 ... Q40577 25897591
    6 4s3d:A (1.8) BS02 DPO 1.17.7.3 GO:0005506 ... Q5SLI8 25868383
    7 5ess:A (2.2) BS02 DPO 2.2.1.9 GO:0000287 ... P9WK11 27291649
    8 5ik6:A (2.3) BS05 DPO 4.2.3.61 GO:0000287 ... Q40577 27328867
    9 5ika:A (2.45) BS04 DPO 4.2.3.61 GO:0000287 ... Q40577 27328867
    10 5o6k:B (2.903) BS01 DPO 2.7.4.- GO:0006797 ... M9XB82 29531036
    11 5o6k:B (2.903) BS02 DPO 2.7.4.- GO:0006797 ... M9XB82 29531036
    12 6os5:B (1.66) BS02 DPO ? GO:0009820 ... A8M6W6 31251043
    13 6os5:C (1.66) BS01 DPO ? GO:0009820 ... A8M6W6 31251043
    14 6wo1:A (3.3) BS03 DPO 2.2.1.6 GO:0000166 ... Q96VZ6 32640464
    15 8v3k:A (1.47) BS02 DPO 4.2.3.37 GO:0016829 ... Q9K499 38420671
    16 8x35:B (1.92) BS02 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    17 8x35:B (1.92) BS03 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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