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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 322 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jlu:P (3.02) BS12 DD6 N/A GO:0009765 ... N/A 31371578
    2 6jlu:p (3.02) BS12 DD6 N/A GO:0009765 ... N/A 31371578
    3 6l4t:10 (2.6) BS16 DD6 N/A GO:0009765 ... N/A N/A
    4 6l4t:10 (2.6) BS17 DD6 N/A GO:0009765 ... N/A N/A
    5 6l4t:11 (2.6) BS11 DD6 N/A GO:0009765 ... N/A N/A
    6 6l4t:12 (2.6) BS14 DD6 N/A GO:0009765 ... N/A N/A
    7 6l4t:12 (2.6) BS16 DD6 N/A GO:0009765 ... N/A N/A
    8 6l4t:13 (2.6) BS15 DD6 N/A GO:0009765 ... N/A N/A
    9 6l4t:15 (2.6) BS19 DD6 N/A GO:0009765 ... N/A N/A
    10 6l4t:15 (2.6) BS20 DD6 N/A GO:0009765 ... N/A N/A
    11 6l4t:16 (2.6) BS14 DD6 N/A GO:0009765 ... N/A N/A
    12 6l4t:6 (2.6) BS15 DD6 N/A GO:0009765 ... N/A N/A
    13 6l4t:6 (2.6) BS16 DD6 N/A GO:0009765 ... N/A N/A
    14 6l4t:6 (2.6) BS18 DD6 N/A GO:0009765 ... N/A N/A
    15 6l4t:6 (2.6) BS19 DD6 N/A GO:0009765 ... N/A N/A
    16 6l4t:7 (2.6) BS01 DD6 N/A GO:0009765 ... N/A N/A
    17 6l4t:7 (2.6) BS13 DD6 N/A GO:0009765 ... N/A N/A
    18 6l4t:7 (2.6) BS16 DD6 N/A GO:0009765 ... N/A N/A
    19 6l4t:7 (2.6) BS17 DD6 N/A GO:0009765 ... N/A N/A
    20 6l4t:8 (2.6) BS20 DD6 N/A GO:0009765 ... N/A N/A
    21 6l4t:8 (2.6) BS21 DD6 N/A GO:0009765 ... N/A N/A
    22 6l4u:1 (2.4) BS12 DD6 N/A GO:0009765 ... N/A N/A
    23 6l4u:10 (2.4) BS15 DD6 N/A GO:0009765 ... N/A N/A
    24 6l4u:10 (2.4) BS16 DD6 N/A GO:0009765 ... N/A N/A
    25 6l4u:11 (2.4) BS11 DD6 N/A GO:0009765 ... N/A N/A
    26 6l4u:12 (2.4) BS14 DD6 N/A GO:0009765 ... N/A N/A
    27 6l4u:12 (2.4) BS16 DD6 N/A GO:0009765 ... N/A N/A
    28 6l4u:13 (2.4) BS16 DD6 N/A GO:0009765 ... N/A N/A
    29 6l4u:15 (2.4) BS17 DD6 N/A GO:0009765 ... N/A N/A
    30 6l4u:15 (2.4) BS18 DD6 N/A GO:0009765 ... N/A N/A
    31 6l4u:16 (2.4) BS14 DD6 N/A GO:0009765 ... N/A N/A
    32 6l4u:2 (2.4) BS16 DD6 N/A GO:0009765 ... N/A N/A
    33 6l4u:2 (2.4) BS17 DD6 N/A GO:0009765 ... N/A N/A
    34 6l4u:2 (2.4) BS18 DD6 N/A GO:0009765 ... N/A N/A
    35 6l4u:3 (2.4) BS11 DD6 N/A GO:0009765 ... N/A N/A
    36 6l4u:3 (2.4) BS12 DD6 N/A GO:0009765 ... N/A N/A
    37 6l4u:3 (2.4) BS15 DD6 N/A GO:0009765 ... N/A N/A
    38 6l4u:4 (2.4) BS15 DD6 N/A GO:0009765 ... N/A N/A
    39 6l4u:4 (2.4) BS18 DD6 N/A GO:0009765 ... N/A N/A
    40 6l4u:5 (2.4) BS13 DD6 N/A GO:0009765 ... N/A N/A
    41 6l4u:5 (2.4) BS14 DD6 N/A GO:0009765 ... N/A N/A
    42 6l4u:5 (2.4) BS17 DD6 N/A GO:0009765 ... N/A N/A
    43 6l4u:6 (2.4) BS02 DD6 N/A GO:0009765 ... N/A N/A
    44 6l4u:6 (2.4) BS17 DD6 N/A GO:0009765 ... N/A N/A
    45 6l4u:6 (2.4) BS18 DD6 N/A GO:0009765 ... N/A N/A
    46 6l4u:6 (2.4) BS20 DD6 N/A GO:0009765 ... N/A N/A
    47 6l4u:6 (2.4) BS21 DD6 N/A GO:0009765 ... N/A N/A
    48 6l4u:7 (2.4) BS02 DD6 N/A GO:0009765 ... N/A N/A
    49 6l4u:7 (2.4) BS14 DD6 N/A GO:0009765 ... N/A N/A
    50 6l4u:7 (2.4) BS17 DD6 N/A GO:0009765 ... N/A N/A
    51 6l4u:7 (2.4) BS18 DD6 N/A GO:0009765 ... N/A N/A
    52 6l4u:8 (2.4) BS20 DD6 N/A GO:0009765 ... N/A N/A
    53 6l4u:8 (2.4) BS21 DD6 N/A GO:0009765 ... N/A N/A
    54 6l4u:9 (2.4) BS13 DD6 N/A GO:0009765 ... N/A N/A
    55 6ly5:A (2.38) BS01 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    56 6ly5:A (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    57 6ly5:A (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    58 6ly5:A (2.38) BS16 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    59 6ly5:B (2.38) BS02 DD6 ? N/A A0A1E7F4Y9 33033236
    60 6ly5:B (2.38) BS04 DD6 ? N/A A0A1E7F4Y9 33033236
    61 6ly5:C (2.38) BS01 DD6 ? GO:0009765 ... A0A6J4B024 33033236
    62 6ly5:D (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    63 6ly5:D (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    64 6ly5:D (2.38) BS05 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    65 6ly5:D (2.38) BS18 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    66 6ly5:E (2.38) BS01 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    67 6ly5:E (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    68 6ly5:E (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    69 6ly5:E (2.38) BS06 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    70 6ly5:F (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B492 33033236
    71 6ly5:G (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B0A4 33033236
    72 6ly5:H (2.38) BS03 DD6 ? GO:0009765 ... B8C0K4 33033236
    73 6ly5:H (2.38) BS04 DD6 ? GO:0009765 ... B8C0K4 33033236
    74 6ly5:I (2.38) BS02 DD6 ? GO:0009765 ... A0A6J4B150 33033236
    75 6ly5:J (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B2D5 33033236
    76 6ly5:K (2.38) BS06 DD6 ? GO:0009765 ... A0A6J4B0S3 33033236
    77 6ly5:K (2.38) BS07 DD6 ? GO:0009765 ... A0A6J4B0S3 33033236
    78 6ly5:L (2.38) BS02 DD6 ? GO:0009765 ... A0A6J4B037 33033236
    79 6ly5:M (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B2D8 33033236
    80 6ly5:O (2.38) BS05 DD6 ? GO:0009765 ... A0A6J4B125 33033236
    81 6ly5:P (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B125 33033236
    82 6ly5:Q (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B125 33033236
    83 6ly5:R (2.38) BS06 DD6 ? GO:0009765 ... A0A6J4B499 33033236
    84 6ly5:R (2.38) BS07 DD6 ? GO:0009765 ... A0A6J4B499 33033236
    85 6ly5:S (2.38) BS07 DD6 ? GO:0009765 ... A0A6J4B7P8 33033236
    86 6ly5:S (2.38) BS08 DD6 ? GO:0009765 ... A0A6J4B7P8 33033236
    87 6ly5:W (2.38) BS04 DD6 ? GO:0009765 ... B7FRW2 33033236
    88 6ly5:W (2.38) BS05 DD6 ? GO:0009765 ... B7FRW2 33033236
    89 6ly5:a (2.38) BS42 DD6 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    90 6ly5:j (2.38) BS06 DD6 ? GO:0009507 ... A4GGC6 33033236
    91 7vd5:16 (2.5) BS15 DD6 N/A GO:0009765 ... N/A N/A
    92 7vd5:19 (2.5) BS14 DD6 N/A GO:0009765 ... N/A N/A
    93 7vd5:20 (2.5) BS12 DD6 N/A N/A N/A N/A
    94 7vd5:20 (2.5) BS13 DD6 N/A N/A N/A N/A
    95 7vd5:21 (2.5) BS10 DD6 N/A GO:0009765 ... N/A N/A
    96 7vd5:21 (2.5) BS13 DD6 N/A GO:0009765 ... N/A N/A
    97 7vd5:36 (2.5) BS15 DD6 N/A GO:0009765 ... N/A N/A
    98 7vd5:39 (2.5) BS13 DD6 N/A GO:0009765 ... N/A N/A
    99 7vd5:40 (2.5) BS13 DD6 N/A N/A N/A N/A
    100 7vd5:40 (2.5) BS14 DD6 N/A N/A N/A N/A
    101 7vd5:41 (2.5) BS10 DD6 N/A GO:0009765 ... N/A N/A
    102 7vd5:41 (2.5) BS13 DD6 N/A GO:0009765 ... N/A N/A
    103 7vd6:16 (2.8) BS15 DD6 N/A GO:0009765 ... N/A N/A
    104 7vd6:19 (2.8) BS14 DD6 N/A GO:0009765 ... N/A N/A
    105 7vd6:20 (2.8) BS13 DD6 N/A GO:0009765 ... N/A N/A
    106 7vd6:20 (2.8) BS15 DD6 N/A GO:0009765 ... N/A N/A
    107 7vd6:21 (2.8) BS12 DD6 N/A GO:0009765 ... N/A N/A
    108 7vd6:21 (2.8) BS15 DD6 N/A GO:0009765 ... N/A N/A
    109 8iwh:1 (2.68) BS03 DD6 ? GO:0009765 ... B8BX93 37878698
    110 8iwh:1 (2.68) BS04 DD6 ? GO:0009765 ... B8BX93 37878698
    111 8iwh:2 (2.68) BS02 DD6 ? GO:0009765 ... B8BX93 37878698
    112 8iwh:2 (2.68) BS03 DD6 ? GO:0009765 ... B8BX93 37878698
    113 8iwh:3 (2.68) BS12 DD6 ? GO:0009416 ... B8BUU4 37878698
    114 8iwh:4 (2.68) BS02 DD6 ? GO:0009765 ... B8BVI1 37878698
    115 8iwh:8 (2.68) BS04 DD6 ? GO:0009765 ... B8BX93 37878698
    116 8iwh:8 (2.68) BS05 DD6 ? GO:0009765 ... B8BX93 37878698
    117 8iwh:9 (2.68) BS03 DD6 ? GO:0009765 ... B8BX93 37878698
    118 8iwh:9 (2.68) BS04 DD6 ? GO:0009765 ... B8BX93 37878698
    119 8j0d:3 (3.19) BS12 DD6 ? GO:0009416 ... B8BUU4 37878698
    120 8j0d:4 (3.19) BS03 DD6 ? GO:0009416 ... B8BVI1 37878698
    121 8j5k:1 (2.93) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    122 8j5k:1 (2.93) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    123 8j5k:2 (2.93) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    124 8j5k:2 (2.93) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    125 8j5k:3 (2.93) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    126 8j5k:6 (2.93) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    127 8j5k:6 (2.93) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    128 8j5k:7 (2.93) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    129 8j5k:7 (2.93) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    130 8j5k:8 (2.93) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    131 8j5k:P (2.93) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    132 8j5k:p (2.93) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    133 8jjr:A (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    134 8jjr:A (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    135 8jjr:A (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    136 8jjr:B (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    137 8jjr:B (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    138 8jjr:B (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    139 8jjr:B (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    140 8jjr:C (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    141 8jjr:C (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    142 8jjr:C (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    143 8jjr:D (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    144 8jjr:D (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    145 8jjr:D (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    146 8jjr:D (2.8) BS18 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    147 8jjr:E (2.8) BS02 DD6 N/A GO:0009765 ... N/A 38493166
    148 8jjr:E (2.8) BS03 DD6 N/A GO:0009765 ... N/A 38493166
    149 8jjr:E (2.8) BS16 DD6 N/A GO:0009765 ... N/A 38493166
    150 8jjr:E (2.8) BS17 DD6 N/A GO:0009765 ... N/A 38493166
    151 8jjr:E (2.8) BS18 DD6 N/A GO:0009765 ... N/A 38493166
    152 8jjr:E (2.8) BS20 DD6 N/A GO:0009765 ... N/A 38493166
    153 8jjr:F (2.8) BS11 DD6 N/A GO:0009765 ... A0AA36INW6 38493166
    154 8jjr:F (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36INW6 38493166
    155 8jjr:G (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    156 8jjr:G (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    157 8jjr:G (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    158 8jjr:G (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    159 8jjr:H (2.8) BS02 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    160 8jjr:H (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    161 8jjr:H (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    162 8jjr:H (2.8) BS19 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    163 8jjr:H (2.8) BS22 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    164 8jjr:I (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36HTH0 38493166
    165 8jjr:I (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36HTH0 38493166
    166 8jjr:J (2.8) BS11 DD6 N/A GO:0009765 ... A0AA36N2P9 38493166
    167 8jjr:K (2.8) BS09 DD6 N/A GO:0009765 ... A0AA36J0D5 38493166
    168 8jjr:K (2.8) BS10 DD6 N/A GO:0009765 ... A0AA36J0D5 38493166
    169 8jjr:K (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36J0D5 38493166
    170 8jjr:T (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36NBE3 38493166
    171 8jjr:T (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36NBE3 38493166
    172 8jjr:U (2.8) BS06 DD6 N/A GO:0009765 ... A0AA36JI10 38493166
    173 8jjr:b (2.8) BS38 DD6 N/A GO:0009579 ... N/A 38493166
    174 8jjr:i (2.8) BS04 DD6 N/A GO:0009522 ... A0AA36J2Y9 38493166
    175 8jjr:r (2.8) BS04 DD6 N/A N/A A0AA36JF81 38493166
    176 8jjr:r (2.8) BS07 DD6 N/A N/A A0AA36JF81 38493166
    177 8jjr:r (2.8) BS08 DD6 N/A N/A A0AA36JF81 38493166
    178 8jw0:A (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    179 8jw0:A (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    180 8jw0:A (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    181 8jw0:A (2.9) BS20 DD6 N/A GO:0009765 ... N/A 38319970
    182 8jw0:B (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    183 8jw0:B (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    184 8jw0:B (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    185 8jw0:B (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    186 8jw0:B (2.9) BS18 DD6 N/A GO:0009765 ... N/A 38319970
    187 8jw0:C (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    188 8jw0:D (2.9) BS04 DD6 ? GO:0009765 ... Q38689 38319970
    189 8jw0:E (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    190 8jw0:E (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    191 8jw0:E (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    192 8jw0:F (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    193 8jw0:F (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    194 8jw0:G (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    195 8jw0:G (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    196 8jw0:G (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    197 8jw0:G (2.9) BS08 DD6 N/A GO:0009765 ... N/A 38319970
    198 8jw0:H (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    199 8jw0:I (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    200 8jw0:I (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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