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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2eat:A (2.9) BS02 CZA 7.2.2.10 GO:0000166 ... P04191 17389383
    2 2eau:A (2.8) BS01 CZA 7.2.2.10 GO:0000166 ... P04191 17389383
    3 2o9j:A (2.65) BS03 CZA 7.2.2.10 GO:0000166 ... P04191 17259168 PDBbind: -logKd/Ki=6.92, Ki=120nM
    4 2oa0:A (3.4) BS01 CZA 7.2.2.10 GO:0000166 ... P04191 17259168 PDBbind: -logKd/Ki=6.92, Ki=120nM
    5 3fgo:A (2.5) BS04 CZA 7.2.2.10 GO:0000166 ... P04191 19289472
    6 3fgo:B (2.5) BS04 CZA 7.2.2.10 GO:0000166 ... P04191 19289472
    7 3fpb:A (2.55) BS04 CZA 7.2.2.10 GO:0000166 ... P04191 19289472
    8 3fps:A (3.2) BS01 CZA 7.2.2.10 GO:0000166 ... P04191 19289472
    9 4bew:A (2.5) BS02 CZA 7.2.2.10 GO:0000166 ... P04191 N/A
    10 4bew:B (2.5) BS02 CZA 7.2.2.10 GO:0000166 ... P04191 N/A
    11 4ycl:A (3.25) BS01 CZA 7.2.2.10 GO:0000166 ... P04191 17389383 PDBbind: -logKd/Ki=8.15, Kd=7nM
    12 5mpm:A (3.3) BS02 CZA 7.2.2.10 GO:0000045 ... P11607 30777856
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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