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BioLiP Library
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e5h:A (1.96) BS02 CO2 1.14.20.1 GO:0005506 ... P18548 11352583
    2 2olq:A (1.94) BS03 CO2 4.1.1.49 GO:0000287 ... P22259 17475535
    3 2olr:A (1.6) BS01 CO2 4.1.1.49 GO:0000287 ... P22259 17475535
    4 2olr:A (1.6) BS02 CO2 4.1.1.49 GO:0000287 ... P22259 17475535
    5 2vva:X (1.56) BS01 CO2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19520834
    6 2vva:X (1.56) BS02 CO2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19520834
    7 2vvb:X (1.66) BS02 CO2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19520834
    8 3b52:X (1.5) BS05 CO2 1.2.7.4 GO:0003824 ... Q9F8A8 18048691
    9 3d92:A (1.1) BS02 CO2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18768466
    10 3d92:A (1.1) BS03 CO2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18768466
    11 3d93:A (1.1) BS01 CO2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18768466
    12 3d93:A (1.1) BS02 CO2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18768466
    13 5t13:A (2.19) BS01 CO2 3.5.2.15 GO:0016787 ... P0A3V4 28345631
    14 5t13:A (2.19) BS02 CO2 3.5.2.15 GO:0016787 ... P0A3V4 28345631
    15 6yrv:AAA (1.94) BS03 CO2 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    16 6yrz:AAA (1.824) BS03 CO2 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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