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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fdy:A (2.45) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 9047371
    2 1fdy:B (2.45) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 9047371
    3 1fdy:C (2.45) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 9047371
    4 1fdy:D (2.45) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 9047371
    5 1hl2:A (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    6 1hl2:B (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    7 1hl2:C (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    8 1hl2:D (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    9 1nfv:D (1.95) BS03 3PY 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10 1o5x:A (1.1) BS02 3PY 5.3.1.1 GO:0004807 ... Q07412 14563846
    11 3lcw:A (2.35) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 N/A
    12 3lcw:B (2.35) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 N/A
    13 3lcw:C (2.35) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 N/A
    14 3lcw:D (2.35) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 N/A
    15 4dqd:A (1.601) BS02 3PY ? N/A Q2IR47 23606130
    16 4mfe:A (2.61) BS02 3PY 6.4.1.1 GO:0003824 ... Q2K340 24157795 PDBbind: -logKd/Ki=2.27, Ki=5.4mM
    17 4mfe:B (2.61) BS02 3PY 6.4.1.1 GO:0003824 ... Q2K340 24157795
    18 4mfe:C (2.61) BS02 3PY 6.4.1.1 GO:0003824 ... Q2K340 24157795
    19 4mfe:D (2.61) BS02 3PY 6.4.1.1 GO:0003824 ... Q2K340 24157795
    20 4x2p:A (1.65) BS01 3PY 5.1.2.2 GO:0000287 ... P11444 25844917
    21 5xsf:A (1.962) BS01 3PY 4.1.2.14
    4.1.3.16    		 GO:0005737 ... Q00384 N/A
    22 6pk1:A (2.1) BS02 3PY 2.6.1.-
    2.6.1.44
    2.6.1.45
    2.6.1.51    		 GO:0003729 ... Q56YA5 31681359
    23 6r62:A (1.55) BS01 3PY N/A GO:0003824 ... N/A N/A
    24 6r62:A (1.55) BS02 3PY N/A GO:0003824 ... N/A N/A
    25 7nnk:A (1.8) BS01 3PY N/A GO:0003824 ... N/A 36214476
    26 7o5v:AAA (1.95) BS02 3PY N/A GO:0003824 ... N/A 36214476
    27 7o87:AAA (1.5) BS01 3PY N/A GO:0003824 ... N/A 36214476
    28 7o87:BBB (1.5) BS01 3PY N/A GO:0003824 ... N/A 36214476
    29 7obu:B (1.2) BS01 3PY N/A GO:0003824 ... N/A 36214476
    30 8adq:A (1.6) BS01 3PY ? GO:0003824 ... A0A9J9HGY6 36214476
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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