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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3nyd:A (1.23) BS01 3NY 3.2.1.8 GO:0004553 ... P23360 22357762 PDBbind: -logKd/Ki=3.48, Ki=330uM
    2 3nyd:B (1.23) BS01 3NY 3.2.1.8 GO:0004553 ... P23360 22357762
    3 3nz1:A (1.56) BS01 3NY 4.1.1.48 GO:0000162 ... Q06121 22357762
    4 3q2d:A (2.19) BS01 3NY N/A GO:0004139 ... N/A 21277311
    5 3q2d:B (2.19) BS01 3NY N/A GO:0004139 ... N/A 21277311
    6 7vus:A (1.7) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    7 7vus:B (1.7) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    8 7vus:C (1.7) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    9 7vus:D (1.7) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    10 7vuu:A (1.95) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    11 7vuu:B (1.95) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    12 7vuu:C (1.95) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    13 7vuu:D (1.95) BS01 3NY ? GO:0005509 ... P0DP23 36198791
    14 8foq:A (1.6) BS01 3NY N/A GO:0004425 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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