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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1u1w:A (1.35) BS01 3HA 5.3.3.17 GO:0002047 ... Q51792 15545603 MOAD: Kd=1.4uM
    PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    2 1u1w:B (1.35) BS01 3HA 5.3.3.17 GO:0002047 ... Q51792 15545603 MOAD: Kd=1.4uM
    3 1yfy:A (3.2) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    4 4hsl:A (2.0) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    5 6cd3:A (2.612) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    6 6d62:A (1.77) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    7 6siy:A (1.95) BS01 3HA ? GO:0000166 ... A0A022MRT4 31903677
    8 6siy:A (1.95) BS03 3HA ? GO:0000166 ... A0A022MRT4 31903677
    9 6siy:B (1.95) BS04 3HA ? GO:0000166 ... A0A022MRT4 31903677
    10 6siy:B (1.95) BS06 3HA ? GO:0000166 ... A0A022MRT4 31903677
    11 6siz:A (1.77) BS02 3HA ? GO:0000166 ... A0A022MRT4 31903677
    12 6siz:B (1.77) BS03 3HA ? GO:0000166 ... A0A022MRT4 31903677
    13 6sj2:A (1.25) BS01 3HA ? GO:0016787 ... A0A022MQ12 31903677
    14 6sj2:B (1.25) BS01 3HA ? GO:0016787 ... A0A022MQ12 31903677
    15 6vi6:A (1.901) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    16 6vi7:A (2.617) BS01 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    17 6vi8:A (1.95) BS04 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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