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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aeo:A (2.1) BS02 2AP 1.11.1.5 GO:0004601 ... P00431 11812152
    2 3rxc:A (1.7) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 N/A
    3 5mn1:A (0.79) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253 MOAD: Kd=3.3mM
    PDBbind: -logKd/Ki=2.48, Kd=3.3mM
    4 5mnb:A (0.939) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253 MOAD: Kd=3.3mM
    PDBbind: -logKd/Ki=2.48, Kd=3.3mM
    5 5mnx:A (1.42) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253 PDBbind: -logKd/Ki=2.48, Kd=3.3mM
    6 5mon:A (0.939) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253 MOAD: Kd=3.3mM
    PDBbind: -logKd/Ki=2.48, Kd=3.3mM
    7 6duc:B (1.791) BS02 2AP 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    8 7pyc:A (2.36) BS01 2AP 2.7.7.15 GO:0003824 ... Q8IEE9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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