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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4k80:A (2.051) BS01 1PW ? GO:0005543 ... Q5TA50 23863933
    2 4nto:A (2.152) BS01 1PW ? GO:0005515 ... O64587 24412362
    3 4nto:B (2.152) BS01 1PW ? GO:0005515 ... O64587 24412362
    4 4nto:B (2.152) BS02 1PW ? GO:0005515 ... O64587 24412362
    5 4nto:C (2.152) BS01 1PW ? GO:0005515 ... O64587 24412362
    6 4nto:C (2.152) BS02 1PW ? GO:0005515 ... O64587 24412362
    7 7w9k:A (2.2) BS09 1PW ? GO:0001518 ... Q15858 35476982
    8 7w9p:A (2.9) BS06 1PW ? GO:0001518 ... Q15858 35476982
    9 7xve:A (2.7) BS04 1PW ? GO:0001518 ... Q15858 35878056
    10 7xvf:A (2.8) BS05 1PW ? GO:0001518 ... Q15858 35878056
    11 8i5y:A (2.6) BS09 1PW ? GO:0001518 ... Q15858 37270609
    12 8xmm:A (2.89) BS03 1PW ? GO:0001518 ... Q15858 38381792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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