Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i1d:A (1.8) BS01 16G 2.3.1.4 GO:0004343 ... P43577 11278591
    2 1i1d:A (1.8) BS03 16G 2.3.1.4 GO:0004343 ... P43577 11278591
    3 1i1d:B (1.8) BS01 16G 2.3.1.4 GO:0004343 ... P43577 11278591
    4 1i1d:C (1.8) BS01 16G 2.3.1.4 GO:0004343 ... P43577 11278591
    5 1i1d:D (1.8) BS01 16G 2.3.1.4 GO:0004343 ... P43577 11278591
    6 1i1d:D (1.8) BS02 16G 2.3.1.4 GO:0004343 ... P43577 11278591
    7 1ne7:A (1.75) BS02 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    8 1ne7:A (1.75) BS04 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    9 1ne7:B (1.75) BS02 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    10 1ne7:B (1.75) BS04 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    11 1ne7:C (1.75) BS02 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    12 1ne7:C (1.75) BS03 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    13 1ne7:D (1.75) BS01 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    14 1ne7:D (1.75) BS03 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    15 1ne7:E (1.75) BS02 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    16 1ne7:E (1.75) BS04 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    17 1ne7:F (1.75) BS02 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    18 1ne7:F (1.75) BS03 16G 3.5.99.6 GO:0004342 ... P46926 12965206
    19 2dkc:A (2.2) BS01 16G 5.4.2.3 GO:0000287 ... Q9P4V2 16651269
    20 2dkc:B (2.2) BS01 16G 5.4.2.3 GO:0000287 ... Q9P4V2 16651269
    21 2o28:A (1.8) BS01 16G 2.3.1.4 GO:0000139 ... Q96EK6 N/A
    22 2o28:B (1.8) BS01 16G 2.3.1.4 GO:0000139 ... Q96EK6 N/A
    23 2vxk:A (1.8) BS01 16G 2.3.1.4 GO:0004343 ... Q4WCU5 18601654
    24 3igs:A (1.5) BS01 16G 5.1.3.9 GO:0005829 ... Q8ZLQ7 N/A
    25 4ag9:A (1.76) BS02 16G 2.3.1.4 GO:0004343 ... Q17427 22868768
    26 4ag9:A (1.76) BS03 16G 2.3.1.4 GO:0004343 ... Q17427 22868768
    27 4ag9:B (1.76) BS01 16G 2.3.1.4 GO:0004343 ... Q17427 22868768
    28 4ag9:B (1.76) BS03 16G 2.3.1.4 GO:0004343 ... Q17427 22868768
    29 4u0w:A (2.001) BS01 16G ? GO:0003677 ... O34817 25564531 MOAD: Kd=1mM
    PDBbind: -logKd/Ki=3.00, Kd=1mM
    30 4u0w:B (2.001) BS01 16G ? GO:0003677 ... O34817 25564531 MOAD: Kd=1mM
    PDBbind: -logKd/Ki=3.00, Kd=1mM
    31 4zsk:A (1.85) BS01 16G ? GO:0003677 ... Q9K492 27337024
    32 5oaw:A (2.34) BS02 16G N/A GO:0000287 ... N/A 29967067
    33 5oaw:B (2.34) BS01 16G N/A GO:0000287 ... N/A 29967067
    34 6fv4:A (1.974) BS02 16G 3.5.1.25 GO:0006040 ... A0QU89 29728457 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    35 8eym:A (2.311) BS01 16G 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    36 8eym:A (2.311) BS03 16G 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    37 8eym:B (2.311) BS01 16G 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    38 8eym:B (2.311) BS02 16G 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218