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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12801 1gph:3 (3.0) BS02 AMP 2.4.2.14 GO:0000287 ... P00497 8197456
    12802 1gph:3 (3.0) BS03 AMP 2.4.2.14 GO:0000287 ... P00497 8197456
    12803 1gph:3 (3.0) BS04 AMP 2.4.2.14 GO:0000287 ... P00497 8197456
    12804 1gph:4 (3.0) BS01 SF4 2.4.2.14 GO:0000287 ... P00497 8197456
    12805 1gph:4 (3.0) BS02 AMP 2.4.2.14 GO:0000287 ... P00497 8197456
    12806 1gph:4 (3.0) BS03 AMP 2.4.2.14 GO:0000287 ... P00497 8197456
    12807 1gpj:A (1.95) BS01 GLU 1.2.1.70 GO:0006779 ... Q9UXR8 11726494
    12808 1gpj:A (1.95) BS02 GMC 1.2.1.70 GO:0006779 ... Q9UXR8 11726494
    12809 1gpk:A (2.1) BS01 HUP 3.1.1.7 GO:0001507 ... P04058 12196020 MOAD: Ki=4.3uM
    PDBbind: -logKd/Ki=5.37, Ki=4.3uM
    BindingDB: IC50=11.4nM
    12810 1gpl:A (2.01) BS01 CA 3.1.1.26
    3.1.1.3    		 GO:0004806 ... P16233
    P81139    		 8939760
    12811 1gpm:A (2.2) BS01 POP 6.3.5.2 GO:0003921 ... P04079 8548458
    12812 1gpm:A (2.2) BS02 AMP 6.3.5.2 GO:0003921 ... P04079 8548458
    12813 1gpm:B (2.2) BS01 POP 6.3.5.2 GO:0003921 ... P04079 8548458
    12814 1gpm:B (2.2) BS02 AMP 6.3.5.2 GO:0003921 ... P04079 8548458
    12815 1gpm:C (2.2) BS01 POP 6.3.5.2 GO:0003921 ... P04079 8548458
    12816 1gpm:C (2.2) BS02 AMP 6.3.5.2 GO:0003921 ... P04079 8548458
    12817 1gpm:D (2.2) BS01 POP 6.3.5.2 GO:0003921 ... P04079 8548458
    12818 1gpm:D (2.2) BS02 AMP 6.3.5.2 GO:0003921 ... P04079 8548458
    12819 1gpn:A (2.35) BS01 HUB 3.1.1.7 GO:0001507 ... P04058 12196020 MOAD: Ki=0.334uM
    PDBbind: -logKd/Ki=6.48, Ki=0.334uM
    BindingDB: Ki=334nM
    12820 1gpu:A (1.86) BS01 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    12821 1gpu:A (1.86) BS02 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    12822 1gpu:A (1.86) BS03 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    12823 1gpu:B (1.86) BS01 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    12824 1gpu:B (1.86) BS02 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    12825 1gpu:B (1.86) BS03 THD 2.2.1.1 GO:0003824 ... P23254 11773632
    12826 1gpw:C (2.4) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    12827 1gpw:C (2.4) BS02 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    12828 1gpw:E (2.4) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 11839304
    12829 1gpx:A (-1.00) BS01 GA ? GO:0005515 ... P00259 9835048
    12830 1gpy:A (2.4) BS01 G6P 2.4.1.1 GO:0000166 ... P00489 8331662 MOAD: Kd~25uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    12831 1gpy:A (2.4) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 8331662
    12832 1gpz:A (2.9) BS01 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    12833 1gpz:A (2.9) BS02 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    12834 1gpz:B (2.9) BS01 FUC 3.4.21.41 GO:0004252 ... P00736 11823416
    12835 1gq2:A (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12836 1gq2:A (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12837 1gq2:A (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12838 1gq2:B (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12839 1gq2:B (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12840 1gq2:B (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12841 1gq2:C (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12842 1gq2:C (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12843 1gq2:C (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12844 1gq2:D (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12845 1gq2:D (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12846 1gq2:D (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12847 1gq2:E (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12848 1gq2:E (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12849 1gq2:E (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12850 1gq2:F (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12851 1gq2:F (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12852 1gq2:F (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12853 1gq2:G (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12854 1gq2:G (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12855 1gq2:G (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12856 1gq2:H (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12857 1gq2:H (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12858 1gq2:H (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12859 1gq2:I (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12860 1gq2:I (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12861 1gq2:I (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12862 1gq2:J (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12863 1gq2:J (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12864 1gq2:J (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12865 1gq2:K (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12866 1gq2:K (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12867 1gq2:K (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12868 1gq2:L (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12869 1gq2:L (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12870 1gq2:L (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12871 1gq2:M (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12872 1gq2:M (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12873 1gq2:M (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12874 1gq2:N (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12875 1gq2:N (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12876 1gq2:N (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12877 1gq2:O (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12878 1gq2:O (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12879 1gq2:O (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12880 1gq2:P (2.5) BS01 NAP 1.1.1.40 GO:0004470 ... P40927 11790843
    12881 1gq2:P (2.5) BS02 OXL 1.1.1.40 GO:0004470 ... P40927 11790843
    12882 1gq2:P (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    12883 1gq6:A (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12884 1gq6:A (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12885 1gq6:B (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12886 1gq6:B (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12887 1gq6:C (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12888 1gq6:C (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12889 1gq7:A (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12890 1gq7:A (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12891 1gq7:B (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12892 1gq7:B (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12893 1gq7:C (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12894 1gq7:C (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12895 1gq7:D (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12896 1gq7:D (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12897 1gq7:E (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12898 1gq7:E (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12899 1gq7:F (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12900 1gq7:F (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    12901 1gq9:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    12902 1gq9:A (2.6) BS02 CTP 2.7.7.38 GO:0005737 ... P42216 11802716
    12903 1gq9:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    12904 1gq9:B (2.6) BS02 CTP 2.7.7.38 GO:0005737 ... P42216 11802716
    12905 1gqa:A (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    12906 1gqa:D (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    12907 1gqb:A (1.8) BS01 BR ? GO:0005537 ... P11717 12499540
    12908 1gqb:A (1.8) BS02 BR ? GO:0005537 ... P11717 12499540
    12909 1gqb:B (1.8) BS01 BR ? GO:0005537 ... P11717 12499540
    12910 1gqb:B (1.8) BS02 BR ? GO:0005537 ... P11717 12499540
    12911 1gqc:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    12912 1gqc:A (2.6) BS02 CMK 2.7.7.38 GO:0005737 ... P42216 11802716
    12913 1gqc:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    12914 1gqc:B (2.6) BS02 C5P 2.7.7.38 GO:0005737 ... P42216 11802716
    12915 1gqi:A (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12916 1gqi:A (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12917 1gqi:A (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12918 1gqi:B (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12919 1gqi:B (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12920 1gqi:B (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12921 1gqi:B (1.48) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12922 1gqj:A (1.9) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12923 1gqj:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12924 1gqj:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12925 1gqj:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12926 1gqj:A (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12927 1gqj:B (1.9) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12928 1gqj:B (1.9) BS02 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12929 1gqj:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12930 1gqj:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12931 1gqj:B (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12932 1gqk:A (1.9) BS01 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12933 1gqk:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12934 1gqk:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12935 1gqk:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12936 1gqk:B (1.9) BS01 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12937 1gqk:B (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12938 1gqk:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12939 1gqk:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12940 1gql:A (1.67) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12941 1gql:A (1.67) BS02 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12942 1gql:A (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12943 1gql:A (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12944 1gql:A (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12945 1gql:A (1.67) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12946 1gql:B (1.67) BS01 XYP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12947 1gql:B (1.67) BS02 BDP 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12948 1gql:B (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12949 1gql:B (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12950 1gql:B (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    12951 1gqm:A (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12952 1gqm:A (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12953 1gqm:A (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12954 1gqm:B (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12955 1gqm:B (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12956 1gqm:B (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12957 1gqm:C (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12958 1gqm:C (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12959 1gqm:C (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12960 1gqm:D (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12961 1gqm:D (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12962 1gqm:D (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12963 1gqm:E (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12964 1gqm:E (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12965 1gqm:E (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12966 1gqm:F (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12967 1gqm:F (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12968 1gqm:F (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12969 1gqm:G (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12970 1gqm:G (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12971 1gqm:G (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12972 1gqm:H (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12973 1gqm:H (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12974 1gqm:H (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12975 1gqm:I (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12976 1gqm:I (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12977 1gqm:I (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12978 1gqm:J (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12979 1gqm:J (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12980 1gqm:J (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12981 1gqm:K (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12982 1gqm:K (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12983 1gqm:K (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12984 1gqm:L (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    12985 1gqm:L (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    12986 1gqm:L (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    12987 1gqr:A (2.2) BS01 SAF 3.1.1.7 GO:0001507 ... P04058 11888271 BindingDB: Ki=700nM
    12988 1gqr:A (2.2) BS02 EMM 3.1.1.7 GO:0001507 ... P04058 11888271
    12989 1gqs:A (3.0) BS01 SAF 3.1.1.7 GO:0001507 ... P04058 11888271 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    BindingDB: Ki=700nM
    12990 1gqt:A (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12991 1gqt:A (2.34) BS02 ACP 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12992 1gqt:A (2.34) BS03 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12993 1gqt:B (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12994 1gqt:B (2.34) BS02 ACP 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12995 1gqt:B (2.34) BS03 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12996 1gqt:C (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12997 1gqt:C (2.34) BS02 ACP 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12998 1gqt:C (2.34) BS03 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    12999 1gqt:D (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    13000 1gqt:D (2.34) BS02 RIB 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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