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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    713401 9evx:b (1.71) BS15 CLA ? GO:0009523 ... Q8DIQ1 38900892
    713402 9evx:b (1.71) BS16 CLA ? GO:0009523 ... Q8DIQ1 38900892
    713403 9evx:c (1.71) BS01 OEX ? GO:0005737 ... Q8DIF8 38900892
    713404 9evx:c (1.71) BS02 CLA ? GO:0005737 ... Q8DIF8 38900892
    713405 9evx:c (1.71) BS03 CLA ? GO:0005737 ... Q8DIF8 38900892
    713406 9evx:c (1.71) BS04 CLA ? GO:0005737 ... Q8DIF8 38900892
    713407 9evx:c (1.71) BS05 CLA ? GO:0005737 ... Q8DIF8 38900892
    713408 9evx:c (1.71) BS06 CLA ? GO:0005737 ... Q8DIF8 38900892
    713409 9evx:c (1.71) BS07 CLA ? GO:0005737 ... Q8DIF8 38900892
    713410 9evx:c (1.71) BS08 CLA ? GO:0005737 ... Q8DIF8 38900892
    713411 9evx:c (1.71) BS09 CLA ? GO:0005737 ... Q8DIF8 38900892
    713412 9evx:c (1.71) BS10 CLA ? GO:0005737 ... Q8DIF8 38900892
    713413 9evx:c (1.71) BS11 CLA ? GO:0005737 ... Q8DIF8 38900892
    713414 9evx:c (1.71) BS12 CLA ? GO:0005737 ... Q8DIF8 38900892
    713415 9evx:c (1.71) BS13 CLA ? GO:0005737 ... Q8DIF8 38900892
    713416 9evx:c (1.71) BS14 CLA ? GO:0005737 ... Q8DIF8 38900892
    713417 9evx:d (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713418 9evx:d (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713419 9evx:d (1.71) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713420 9evx:d (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713421 9evx:d (1.71) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713422 9evx:d (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713423 9evx:d (1.71) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713424 9evx:d (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713425 9evx:d (1.71) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    713426 9evx:e (1.71) BS01 HEM ? GO:0005506 ... Q8DIP0 38900892
    713427 9evx:f (1.71) BS01 HEM ? GO:0005506 ... Q8DIN9 38900892
    713428 9evx:h (1.71) BS01 CLA ? GO:0009523 ... Q8DJ43 38900892
    713429 9evx:h (1.71) BS02 CLA ? GO:0009523 ... Q8DJ43 38900892
    713430 9evx:h (1.71) BS03 CLA ? GO:0009523 ... Q8DJ43 38900892
    713431 9evx:h (1.71) BS04 CLA ? GO:0009523 ... Q8DJ43 38900892
    713432 9evx:i (1.71) BS01 CLA ? GO:0005737 ... Q8DJZ6 38900892
    713433 9evx:j (1.71) BS01 peptide ? GO:0009523 ... P59087 38900892
    713434 9evx:k (1.71) BS01 peptide ? GO:0005737 ... Q9F1K9 38900892
    713435 9evx:k (1.71) BS02 CLA ? GO:0005737 ... Q9F1K9 38900892
    713436 9evx:k (1.71) BS03 CLA ? GO:0005737 ... Q9F1K9 38900892
    713437 9evx:z (1.71) BS01 peptide ? GO:0009523 ... Q8DHJ2 38900892
    713438 9ex0:A (1.45) BS01 NA N/A GO:0003796 ... P00698 38842919
    713439 9ex0:A (1.45) BS02 A1ICR N/A GO:0003796 ... P00698 38842919
    713440 9ex0:A (1.45) BS03 VO4 N/A GO:0003796 ... P00698 38842919
    713441 9ex1:A (1.785) BS01 A1H8D N/A GO:0003796 ... P00698 38842919
    713442 9ex2:A (1.172) BS01 NA N/A GO:0003796 ... P00698 38842919
    713443 9ex2:A (1.172) BS02 VO4 N/A GO:0003796 ... P00698 38842919
    713444 9ex2:A (1.172) BS03 A1H8D N/A GO:0003796 ... P00698 38842919
    713445 9ex2:A (1.172) BS04 A1H8D N/A GO:0003796 ... P00698 38842919
    713446 9ex2:A (1.172) BS05 VO4 N/A GO:0003796 ... P00698 38842919
    713447 9ex2:A (1.172) BS06 VO4 N/A GO:0003796 ... P00698 38842919
    713448 9ezj:A (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    713449 9ezj:A (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    713450 9ezj:B (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    713451 9ezj:B (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    713452 9ezj:C (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    713453 9ezj:C (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    713454 9ezj:D (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    713455 9ezj:D (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    713456 9f0f:A (2.1) BS01 HT9 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    713457 9f0f:A (2.1) BS02 FE 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    713458 9f0g:A (1.85) BS01 FEC 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    713459 9f14:A (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713460 9f14:B (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713461 9f3w:A (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713462 9f3w:B (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713463 9f3w:C (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713464 9f3w:D (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713465 9f3w:E (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713466 9f3w:F (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713467 9f3w:G (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713468 9f3w:H (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713469 9f3x:A (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713470 9f3x:B (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713471 9f3x:C (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713472 9f3x:D (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713473 9f3x:E (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713474 9f3x:F (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713475 9f3x:G (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713476 9f3x:H (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713477 9f3y:A (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713478 9f3y:B (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713479 9f3y:C (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713480 9f3y:D (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713481 9f3y:E (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713482 9f3y:F (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713483 9f3y:G (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713484 9f3y:H (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    713485 9f8x:A (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    713486 9f8x:A (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    713487 9f8x:A (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713488 9f8x:A (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713489 9f8x:B (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    713490 9f8x:B (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    713491 9f8x:B (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713492 9f8x:B (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713493 9f8x:C (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    713494 9f8x:C (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    713495 9f8x:C (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713496 9f8x:C (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713497 9f8x:D (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    713498 9f8x:D (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    713499 9f8x:D (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713500 9f8x:D (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    713501 9f9z:A (2.279) BS01 A1IBI N/A GO:0004336 ... P04062 38932616
    713502 9fbv:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    713503 9fbv:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    713504 9fbv:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    713505 9fbv:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    713506 9fbv:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    713507 9fbv:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    713508 9fbv:4 (2.4) BS02 rna N/A GO:0002181 ... P0A7M9 38826346
    713509 9fbv:4 (2.4) BS03 ZN N/A GO:0002181 ... P0A7M9 38826346
    713510 9fbv:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    713511 9fbv:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    713512 9fbv:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    713513 9fbv:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    713514 9fbv:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    713515 9fbv:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    713516 9fbv:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    713517 9fbv:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    713518 9fbv:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    713519 9fbv:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    713520 9fbv:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    713521 9fbv:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    713522 9fbv:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    713523 9fbv:M (2.4) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    713524 9fbv:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    713525 9fbv:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    713526 9fbv:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    713527 9fbv:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    713528 9fbv:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    713529 9fbv:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    713530 9fbv:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    713531 9fbv:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    713532 9fbv:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    713533 9fbv:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    713534 9fbv:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    713535 9fbv:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    713536 9fbv:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    713537 9fbv:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    713538 9fbv:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    713539 9fbv:f (2.4) BS03 rna N/A GO:0000027 ... P62399 38826346
    713540 9fbv:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    713541 9fbv:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    713542 9fbv:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    713543 9fbv:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    713544 9fbv:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    713545 9fbv:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    713546 9fbv:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    713547 9fbv:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    713548 9fbv:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    713549 9fbv:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    713550 9fbv:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    713551 9fbv:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    713552 9fbv:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    713553 9fbv:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    713554 9fbv:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    713555 9fbv:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    713556 9fbv:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    713557 9fbv:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    713558 9fbv:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    713559 9fbv:u (2.4) BS02 rna N/A GO:0000027 ... P68919 38826346
    713560 9fbv:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    713561 9fbv:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    713562 9fbv:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    713563 9fbv:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    713564 9fbv:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    713565 9fbv:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    713566 9fbv:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    713567 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713568 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713569 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713570 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713571 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713572 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713573 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713574 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    713575 9fdj:B (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713576 9fdj:B (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713577 9fdj:B (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    713578 9fdj:D (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713579 9fdj:D (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713580 9fdj:D (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    713581 9fdk:B (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713582 9fdk:B (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713583 9fdk:D (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713584 9fdk:D (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713585 9fdv:B (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713586 9fdv:B (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713587 9fdv:D (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713588 9fdv:D (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713589 9fe0:B (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713590 9fe0:B (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713591 9fe0:B (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    713592 9fe0:D (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713593 9fe0:D (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713594 9fe0:D (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    713595 9fe5:B (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713596 9fe5:B (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713597 9fe5:B (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    713598 9fe5:D (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713599 9fe5:D (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713600 9fe5:D (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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